1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtgagttttgcactattttatctcttggtgcaaatctatatcttaaacaaatggcagttgaaagcatttgaatacatttcattatttgtacctgtccagGTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTTGCCGCACACTATGGGAAGATCGAAACCATGGGATGCTTGGTTGAAGAAG
species | Zea mays |
transcript | GRMZM2G017624_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGCTGCACGCTATGGCAGCACTGAGCTTGTGCGGATCTTACTTCAG GTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTTEST: gi|76293442|gb|DV033010.1|DV033010
genomic: TTGAAGCTGCACGCTATGGCAGCACTGAGCTTGTGCGGATCTTACTTCAGgtaattttag ... acctgtccagGTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTT
EST: TTGAAGCTGCACGCTATGGCAGCACTGAGCTTGTGCGGATCTTACTTCAG GTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTTEST: gi|20300941|gb|BQ163884.1|BQ163884
genomic: TTGAAGCTGCACGCTATGGCAGCACTGAGCTTGTGCGGATCTTACTTCAGgtaattttag ... acctgtccagGTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTT
EST: TTGAAGCTGCACGCTATGGCAGCACTGAGCTTGTGCGGATCTTACTTCAG GTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTTEST: gi|83278597|gb|DV942605.1|DV942605
genomic: TTGAAGCTGCACGCTATGGCAGCACTGAGCTTGTGCGGATCTTACTTCAGgtaattttag ... acctgtccagGTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTT
EST: GCACGCTATGGCAGCACTGAGCTTGTGCGGATCTTACTTCAG GTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTTEST: gi|71446877|gb|DR827927.1|DR827927
genomic: GCACGCTATGGCAGCACTGAGCTTGTGCGGATCTTACTTCAGgtaattttag ... acctgtccagGTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTT
EST: TTGAAGCTGCACGCTATGGCAGCACTGAGCTTGTGCGGATCTTACTTCAG GTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTT
genomic: TTGAAGCTGCACGCTATGGCAGCACTGAGCTTGTGCGGATCTTACTTCAGgtaattttag ... acctgtccagGTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTT
aaacaaatggcagttgaaagcatttgaatacatttcattatttgtacctgtccagGTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTTGCCGCACACTATGGGAAGATCGAAACCATGGGATGCTTGGTTGAAGAAG
cctgtcc CT-rich tract
atttgaatacatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgagttttgcactattttatctcttggtgcaaatctatatcttaaacaaatggcagttgaaagcatttgaatacatttcattatttgtacctgtccagGTTGCTCAAAGAAACAGCTTGGACATTGATGTGGACCTAGCCCTTGGCTTTGCCGCACACTATGGGAAGATCGAAACCATGGGATGCTTGGTTGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - ttttgca
- - - - - - - - - - - - - tggtgca
- - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcagttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttg