1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatgaacttaagtaacatattgctaacatctattcagccccagtaatacattgccttcttacacagtactactttactgagtggttatttgaaaacagGTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAATCATCGATCACAGAAGCGCACATCACTGGACAGCTCAATGGACTCACGG
species | Zea mays |
transcript | GRMZM2G017616_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCGACAGACTGTGGCAGGAATAAACCCAGTTAGCATCACCAGGCTCACG GTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAAEST: gi|211506485|gb|FL158294.1|FL158294
genomic: CTCGACAGACTGTGGCAGGAATAAACCCAGTTAGCATCACCAGGCTCACGgtaatgaact ... ttgaaaacagGTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAA
EST: CTCGACAGACTGTGGCAGGAATAAACCCAGTTAGCATCACCAGGCTCACG GTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAAEST: gi|71315075|gb|DR794165.1|DR794165
genomic: CTCGACAGACTGTGGCAGGAATAAACCCAGTTAGCATCACCAGGCTCACGgtaatgaact ... ttgaaaacagGTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAA
EST: CTCGACAGACTGTGGCAGGAATAAACCCAGTTAGCATCACCAGGCTCACG GTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAAEST: gi|211506487|gb|FL158296.1|FL158296
genomic: CTCGACAGACTGTGGCAGGAATAAACCCAGTTAGCATCACCAGGCTCACGgtaatgaact ... ttgaaaacagGTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAA
EST: CTCGATTGACTGTGGCAGGAATAAACCCAGTTAGCATCACCAGGCTCACG GTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAAEST: gi|78103541|gb|DV521969.1|DV521969
genomic: CTCGACAGACTGTGGCAGGAATAAACCCAGTTAGCATCACCAGGCTCACGgtaatgaact ... ttgaaaacagGTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAA
EST: CTCGACAGACTGTGGCAGGAATAAACCCAGTTAGCATCACCAGGCTCACG GTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAA
genomic: CTCGACAGACTGTGGCAGGAATAAACCCAGTTAGCATCACCAGGCTCACGgtaatgaact ... ttgaaaacagGTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAA
taatacattgccttcttacacagtactactttactgagtggttatttgaaaacagGTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAATCATCGATCACAGAAGCGCACATCACTGGACAGCTCAATGGACTCACGG
ttcttac putative branch site (score: 69)
ttatttgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaacttaagtaacatattgctaacatctattcagccccagtaatacattgccttcttacacagtactactttactgagtggttatttgaaaacagGTTTTCCCACCAGTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAATCATCGATCACAGAAGCGCACATCACTGGACAGCTCAATGGACTCACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA