1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatgtgatcatgtcatttactgtactgttttcccttcctccagtccagacacaaatactgtatcggtgagctgtttctgggtgcagATGAAAATAAAGCCAATGGATCAAATTCTTGTATATACTCCATAAATGCGAGGCTAAAGAAATTTTCAGATTGGCTTTTGGATATCATAGCAATGGGCGA
species | Zea mays |
transcript | GRMZM2G016858_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGTCTAGATTGAATTACACGATTTCTCAGGGTGAAGAAACTCAGCATG ATGAAAATAAAGCCAATGGATCAAATTCTTGTATATACTCCATAAATGCGAEST: gi|211362376|gb|FL342937.1|FL342937
genomic: TTTGTCTAGATTGAATTACACGATTTCTCAGGGTGAAGAAACTCAGCATGgtaatgtgat ... ctgggtgcagATGAAAATAAAGCCAATGGATCAAATTCTTGTATATACTCCATAAATGCGA
EST: TTTGTCTAGATTGAATTACACGATTTCTCAGGGTGAAGAAACTCAGCATG ATGAAAATAAAGCCAATGGATCAAATTCTTGTATATACTCCATAAATGCGAEST: gi|76915355|gb|DV165945.1|DV165945
genomic: TTTGTCTAGATTGAATTACACGATTTCTCAGGGTGAAGAAACTCAGCATGgtaatgtgat ... ctgggtgcagATGAAAATAAAGCCAATGGATCAAATTCTTGTATATACTCCATAAATGCGA
EST: TTTGTCTAGATTGAATTACACGATTTCTCAGGGTGAAGAAACTCAGCATG ATGAAAATAAAGCCAATGGATCAAATTCTTGTATATACTCCATAAATGCGA
genomic: TTTGTCTAGATTGAATTACACGATTTCTCAGGGTGAAGAAACTCAGCATGgtaatgtgat ... ctgggtgcagATGAAAATAAAGCCAATGGATCAAATTCTTGTATATACTCCATAAATGCGA
cccttcctccagtccagacacaaatactgtatcggtgagctgtttctgggtgcagATGAAAATAAAGCCAATGGATCAAATTCTTGTATATACTCCATAAATGCGAGGCTAAAGAAATTTTCAGATTGGCTTTTGGATATCATAGCAATGGGCGA
ctgtttct CT-rich tract
acaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtgatcatgtcatttactgtactgttttcccttcctccagtccagacacaaatactgtatcggtgagctgtttctgggtgcagATGAAAATAAAGCCAATGGATCAAATTCTTGTATATACTCCATAAATGCGAGGCTAAAGAAATTTTCAGATTGGCTTTTGGATATCATAGCAATGGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA