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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatttctatactatctcacccttttgatggtatatatctgaagattggttttttatggtatgaatccaattttccctctacttaaacgtttgtcatttatgtttgggtccttgcagCCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAG

Basic information

species Zea mays
transcript GRMZM2G015730_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015730_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g17930.1 (Oryza sativa), 3'ss of exon 3
gtagatttctatactatctcacccttttgatggtatatatctgaagattggttttttatggtatgaatccaattttccctctacttaaacgtttgtcatttatgtttgggtccttgcagCCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAG
          |||||   | || | |      |   ||  |  | |||  | || |     |||  |  | |   |   |||   ||  | | |||  ||| |||||||   |||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
----------atactggtttacgcat------gctcatgccacatgat--gcttctagaattattcagactaacatgtatct-tgtattcctgtgtggtttgtgtttggtctcttgcagCTATTGCAGTTAAAGAGAAACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40337560|gb|CK371630.1|CK371630
EST:     CAGCTGGTCAAATAGAACTAACGGTTAAGCTAACAGGGTTAAACGAAATG                         CCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTC
genomic: CAGCTGGTCAAATAGAACTAACGGTTAAGCTAACAGGGTTAAACGAAATGgtagatttct ... gtccttgcagCCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatccaattttccctctacttaaacgtttgtcatttatgtttgggtccttgcagCCATTGGAGTTAAAGAAAAACTAGAATCTCTTTGTAGGGAGTTTCAGCGTCAAAACAAAATGCTAAAG
                                              tccttgc  CT-rich tract
                                 atttatgttt  TA-rich tract