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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctgagaggactattctgtgattttctctgaagtgattctttgttcattttaatctgatcatattttgaaaaataatgctgtattgcaatgcttgtagCTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGATGCTTTGACTGCGGAAATGGCTTTTAGATGTGCACGGGGGCTTCCTCCTG

Basic information

species Zea mays
transcript GRMZM2G015610_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015610_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g37660.2 (Oryza sativa), 3'ss of exon 5
tttctgagaggactattctgtgattttctctgaagt-gattctttgttcattttaatctgat---catattttgaaaaa--taatgctgtattgcaatgcttgtagCTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGATGCTTTGACTGCGGAAATGGCTTTTAGATGTGCACGGGGGCTTCCTCCTG
  | | ||     | || ||| ||||||| | ||||  |||       |   || || |  |   |||| | ||||||   |||||     | |  ||   |  |||| || |  ||||||||  |  | |||||||||||||| |||||||||||||| ||||||| ||| | ||||||||| |||||||| ||||||||||| |
--ttttag----ttgttttgtcattttctttcaagttaattgaagaggctccttgattttttttccatactatgaaaatattaatgtctactggtgatttcttcagCTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGATGCCTTGACTGTGGATACGGCTTTTAGTTGTGCACGAGGGCTTCCTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211452532|gb|FK957877.1|FK957877
EST:     CCGGTTCCTTATGTGAAGCAAATTAAG                         CTGTCTAACGCTGGAGGCCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT
genomic: CCGGTTCCTTATGTGAAGCAAATTAAGgtacactgtt ... atgcttgtagCTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT
EST: gi|91869347|gb|EB400346.1|EB400346
EST:     AGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAG                         CTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT
genomic: AGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAGgtacactgtt ... atgcttgtagCTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT
EST: gi|32913202|gb|CF018014.1|CF018014
EST:     AGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAG                         CTGTCTAACGCTGGAGGCCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT
genomic: AGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAGgtacactgtt ... atgcttgtagCTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT
EST: gi|148930783|gb|EC873124.2|EC873124
EST:     AGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAG                         CTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT
genomic: AGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAGgtacactgtt ... atgcttgtagCTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattttaatctgatcatattttgaaaaataatgctgtattgcaatgcttgtagCTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGATGCTTTGACTGCGGAAATGGCTTTTAGATGTGCACGGGGGCTTCCTCCTG
     tttaatctgatcatat  TA-rich tract