Sequence
atgc intronic sequence ATGC exonic sequence...aataaaaatgattcacgttgatttactgaactaaggaaagcttttgtgttctttcttggcttgctaaaacttctgtaatccagtaatcgtcctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGGTTCTTTTAAACATTTCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G015324_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g41510.1 (Oryza sativa), 3'ss of exon 5
aataaaaatgattcacgtt--gatttactgaactaaggaaagcttttgtgttctttct-tggcttgctaaaacttctgtaatccagtaatcgtc-ctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGGTTCTTTTAAACATTTCTT
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----aaacttctttacctctgaagtaacatatttacgacatgctttaacatacatcctattgttcgttggtaactaaaatttctattcttattctcttgtacagGTAAAACAGATGTTGATTGCTCTTCTAGGTGAATCAGAAATGAGATTATCTGATGAGATTATTGAGACAATCCTTGACAAG-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110194722|gb|EC876620.1|EC876620EST: CGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAG GTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
genomic: CGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAGgtaatttttg ... cctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgttctttcttggcttgctaaaacttctgtaatccagtaatcgtcctagtgcagGTTAAGCAGATGTTAATTGCTCTTCTAGGAGAATCAGAAATGAGGCTATCTGATGATATCATTGAGACAATCCTGGATAAGGTTCTTTTAAACATTTCTT
tgctaaa putative branch site (score: 2)
tcgtcct putative PPT
taaaactt TA-rich tract