Sequence
atgc intronic sequence ATGC exonic sequence...atctattctaacttgaggaaatgatttattttcccaagtacagaatgacttgtgagaaatacagaaacatcagaactaagctctgtttttttcctttcagTTATGAAGATGCTTTCAACCGTTTTATTGATGAGATCAATTTGGTGGCTGCATATGAGTGGTGGGAAGGATCTATACATAGTATACTTTCTGTTCTTGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G015291_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g10380.1 (Oryza sativa), 3'ss of exon 15
----atctattcta-acttgaggaaatgatttattttcccaagtacagaatgacttgtgagaaatacagaaacatcagaactaagct-ctgtttttttcctttcagTTATGAAGATGCTTTCAACCGTTTTATTGATGAGATCAATTTGGTGGCTGCATATGAGTGGTGGGAAGGATCTATACATAGTATACTTTCTGTTCTTGCG
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aactatgtcatatatatttccgaagaatgttcatgtctccat---cagtat--tttgtttgtattccttgc-cataggtgatatcttgttactttttttttgccagATATGAAGATGCTTTTAACCGTTTTATCGATGAGATCAATTTGGTGGCTGCATACGAGTGGTGGGAAGGATCTATACATAGTATACTTTCAGTACTTGCA
upper sequence: GRMZM2G015291_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA01G41140.1 (Glycine max), 3'ss of exon 15
atctattctaacttgaggaaatgatttattttcccaag-taca-gaatgacttgtgagaaatacagaaacatcagaactaagctctgtttttttccttt---cagTTATGAAGATGCTTTCAACCGTTTTATTGATGAGATCAATTTGGTGGCTGCATATGAGTGGTGGGAAGGATCTATACATAGTATACTTTCTGTTCTTGCG
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-----tactattccaaaaccttaagctgttgggtgaaaacacatgactgacttctctaacaataattgtgattttaagttagatttgatcataactgtgatgcagGTATGAGGATGCTTTTAATAGGTTTATTGATGAAATCAACTCGGTTGCTGCATATGATTGGTGGGAGGGATCAGTGCACAGTATACTTTCTGTTGTTGCA
upper sequence: GRMZM2G015291_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA11G04290.1 (Glycine max), 3'ss of exon 15
atctattctaacttgaggaaatgatttattttcccaagtacagaatgacttgtgagaaatacagaaacatcagaactaagctctgtttttttcct--ttcagTTATGAAGATGCTTTCAACCGTTTTATTGATGAGATCAATTTGGTGGCTGCATATGAGTGGTGGGAAGGATCTATACATAGTATACTTTCTGTTCTTGCG
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--aaagcttaagctgttaggtgaaaacacatgactggctttatattacttctctaacaataattgtgattttaagttagatttaatcctaactgtgatgcagGTATGAGGATGCTTTTAATAGATTTATTGATGAAATCAACTCGGTTGCTGCATATGATTGGTGGGAGGGATCAGTGCACAGTATACTTTCAGTTGTTGCA
upper sequence: GRMZM2G015291_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 15
-atctattctaacttgaggaaatgatttattttcccaagtacagaatgacttgtgagaaatacagaaacatcagaactaagctctgtttttttcctttcagTTATGAAGATGCTTTCAACCGTTTTATTGATGAGATCAATTTGGTGGCTGCATATGAGTGGTGGGAAGGATCTATACATAGTATACTTTCTGTTCTTGCG
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ttagaagcctattgtattggaagaacatattagcatcaggttgtgccatctcatgattcaaaaaaatgttttctaa-tattctgactattttgatctacagGTATGAAGATGCTTTTAACAGATTCATTGATGAGATTAATTCAGTTGCTGCATATGATTGGTGGGAAGGGTCAGTACACAGCATACTTTCAGTGCTTGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgacttgtgagaaatacagaaacatcagaactaagctctgtttttttcctttcagTTATGAAGATGCTTTCAACCGTTTTATTGATGAGATCAATTTGGTGGCTGCATATGAGTGGTGGGAAGGATCTATACATAGTATACTTTCTGTTCTTGCG
ctctgtttttttcctt CT-rich tract
tgttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atctattctaacttgaggaaatgatttattttcccaagtacagaatgacttgtgagaaatacagaaacatcagaactaagctctgtttttttcctttcagTTATGAAGATGCTTTCAACCGTTTTATTGATGAGATCAATTTGGTGGCTGCATATGAGTGGTGGGAAGGATCTATACATAGTATACTTTCTGTTCTTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaactaa