1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttttttattattatttcaaggtatatattttttacctattttctgtcatatgcttgtatggtgcatggaagctgatgagtgcgtcctctatgcttttcagGTCCTTTTCCAAAATGATTCTCCTGCAACATTACTTGCTCGCGTGATGGGCATCATTGGCTCCATAGAACAAGCTATGCTTGCACAGGGACGCGACACCT
species | Zea mays |
transcript | GRMZM2G015073_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGCACCGGAAAT GTCCTTTTCCAAAATGATTCTCCTGCAAACATTACTTGCTCGCGTGATGGGEST: gi|211308339|gb|FL230277.1|FL230277
genomic: TTTGCACCGGAAATgtaagtggtt ... tgcttttcagGTCCTTTTCCAAAATGATTCTCCTGC-AACATTACTTGCTCGCGTGATGGG
EST: TAGATGTATGGTCACTTGGTTGTATATTAGCAGAGCTTTGCACCGGAAAT GTCCTTTTCCAAAATGATTCTCCTGCAACATTACTTGCTCGCGTGATGGGCEST: gi|76019753|gb|DT946923.1|DT946923
genomic: TAGATGTATGGTCACTTGGTTGTATATTAGCAGAGCTTTGCACCGGAAATgtaagtggtt ... tgcttttcagGTCCTTTTCCAAAATGATTCTCCTGCAACATTACTTGCTCGCGTGATGGGC
EST: TAGATGTATGGTCACTTGGTTGTATATTAGCAGAGCTTTGCACCGGAAAT GTCCTTTTCCAAAATGATTCTCCTGCAACATTACTTGCTCGCGTGATGGGC
genomic: TAGATGTATGGTCACTTGGTTGTATATTAGCAGAGCTTTGCACCGGAAATgtaagtggtt ... tgcttttcagGTCCTTTTCCAAAATGATTCTCCTGCAACATTACTTGCTCGCGTGATGGGC
tcatatgcttgtatggtgcatggaagctgatgagtgcgtcctctatgcttttcagGTCCTTTTCCAAAATGATTCTCCTGCAACATTACTTGCTCGCGTGATGGGCATCATTGGCTCCATAGAACAAGCTATGCTTGCACAGGGACGCGACACCT
agctgat putative branch site (score: 86)
tcctctatgcttttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttattattatttcaaggtatatattttttacctattttctgtcatatgcttgtatggtgcatggaagctgatgagtgcgtcctctatgcttttcagGTCCTTTTCCAAAATGATTCTCCTGCAACATTACTTGCTCGCGTGATGGGCATCATTGGCTCCATAGAACAAGCTATGCTTGCACAGGGACGCGACACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg