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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttatttgatagatgcaaaatctagcataattctatcattttatacacatctatatgacctttgtgatatgtcacaatatgaggtgttcaaatgtgtctaactactaaattattgtcttctcctatttgttttacagGAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCACAAGTGTGGAGACTTGAATTCATATATACTTAGTTAGGCTCAATATTAGTGCAAACAGTTGAT

Basic information

species Zea mays
transcript GRMZM2G014367_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934225|gb|CF039037.1|CF039037
EST:     TTGTCTCACCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAG                         GAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCACAAGTGTGGAGACT
genomic: TTGTCTCACCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAGgtaagtttat ... tgttttacagGAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCACAAGTGTGGAGACT
EST: gi|12970345|gb|BG266937.1|BG266937
EST:     TTGTCTCACCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAG                         GAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCAC
genomic: TTGTCTCACCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAGgtaagtttat ... tgttttacagGAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCAC
EST: gi|211038615|gb|FL457701.1|FL457701
EST:     TTGTCTCMCCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAG                         GAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCACAAGTGTGGAGACT
genomic: TTGTCTCACCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAGgtaagtttat ... tgttttacagGAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCACAAGTGTGGAGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgttcaaatgtgtctaactactaaattattgtcttctcctatttgttttacagGAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCACAAGTGTGGAGACTTGAATTCATATATACTTAGTTAGGCTCAATATTAGTGCAAACAGTTGAT
                    tactaaa  putative branch site (score: 1)
                              ttgtcttctcctattt  putative PPT
                taactactaaattatt  TA-rich tract