1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctaaacttgtgattatctgatggttaataaattcctttagaagtgcctcattgaaagatgttgctatgttgattgataactatttttattttcgttgcagGGATGATTTGATAGTTTTTTTTTCCCGTTGCGGCTGTAGGCATGACCTGTAAACTAATGGAGACTCAGATTTTGGTATGGTTAGCTTCTTTTCCATCTGG
species | Zea mays |
transcript | GRMZM2G012761_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTAAATGTCGATCTGGGCCCGGCAATACTTCTTAGGGTGGGCATAGCTG GGATGATTTGATAGNNNNNNNNNCCCGTTGCGGCTGTAGGCATGACCTGTAEST: gi|148951286|gb|EC896992.2|EC896992
genomic: GCTAAATGTCGATCTGGGCCCGGCAATACTTCTTAGGGTGGGCATAGCTGgtgagtatct ... ttcgttgcagGGATGATTTGATAGTTTTTTTTTCCCGTTGCGGCTGTAGGCATGACCTGTA
EST: GCTAAATGTCGATCTGGGCCCGGCAATACTTCTTAGGGTGGGCATAGCTG GGATGATTTGATAGNNNNNNNNNCCCGTTGCGGCTGTAGGCATGACCTGTAEST: gi|60354956|gb|DN221929.1|DN221929
genomic: GCTAAATGTCGATCTGGGCCCGGCAATACTTCTTAGGGTGGGCATAGCTGgtgagtatct ... ttcgttgcagGGATGATTTGATAGTTTTTTTTTCCCGTTGCGGCTGTAGGCATGACCTGTA
EST: GCTAAATGTCGATCTGGGCCCGGCAATACTTCTTAGGGTGGGCATAGCTG GGATGATTTGATAGNNNNNNNNNCCCGTTGCGGCTGTAGGCATGACCTGTAEST: gi|60397665|gb|DN230481.1|DN230481
genomic: GCTAAATGTCGATCTGGGCCCGGCAATACTTCTTAGGGTGGGCATAGCTGgtgagtatct ... ttcgttgcagGGATGATTTGATAGTTTTTTTTTCCCGTTGCGGCTGTAGGCATGACCTGTA
EST: GCTAAATGTCGATCTGGGCCCGGCAATACTTCTTAGGGTGGGCATAGCTG GGATGATTTGATAGNNNNNNNNNCCCGTTGCGGCTGTAGGCATGACCTGTA
genomic: GCTAAATGTCGATCTGGGCCCGGCAATACTTCTTAGGGTGGGCATAGCTGgtgagtatct ... ttcgttgcagGGATGATTTGATAGTTTTTTTTTCCCGTTGCGGCTGTAGGCATGACCTGTA
cctcattgaaagatgttgctatgttgattgataactatttttattttcgttgcagGGATGATTTGATAGTTTTTTTTTCCCGTTGCGGCTGTAGGCATGACCTGTAAACTAATGGAGACTCAGATTTTGGTATGGTTAGCTTCTTTTCCATCTGG
tgataac putative branch site (score: 19)
ctatttttattttc CT-rich tract
tatgttgattgataac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaacttgtgattatctgatggttaataaattcctttagaagtgcctcattgaaagatgttgctatgttgattgataactatttttattttcgttgcagGGATGATTTGATAGTTTTTTTTTCCCGTTGCGGCTGTAGGCATGACCTGTAAACTAATGGAGACTCAGATTTTGGTATGGTTAGCTTCTTTTCCATCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - -tgtgatt
- - - - - - - - ctgatgg
- - - - - - - - - - - - - - - - - - - - - gtgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat