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...tggcattaccgatatctcttgaacttttatttgctcaccagtttacttttggtgcatgattatgttgttgttgttaatttcctatatactgaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGATGGAAAAGTTCTTTTTGGCAGTGATGGCACCTCAATGCTGTATAAGCTGG
species | Zea mays |
transcript | GRMZM2G011893_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAA TGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGATEST: gi|78122303|gb|DV540687.1|DV540687
genomic: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgcc ... gaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGAT
EST: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAA TGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGATEST: gi|211236233|gb|FL280786.1|FL280786
genomic: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgcc ... gaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGAT
EST: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAA TGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGATEST: gi|211236235|gb|FL280788.1|FL280788
genomic: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgcc ... gaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGAT
EST: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAA TGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGAT
genomic: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgcc ... gaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGAT
cttttggtgcatgattatgttgttgttgttaatttcctatatactgaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGATGGAAAAGTTCTTTTTGGCAGTGATGGCACCTCAATGCTGTATAAGCTGG
tgttaat putative branch site (score: 3)
ttaatttcctatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcattaccgatatctcttgaacttttatttgctcaccagtttacttttggtgcatgattatgttgttgttgttaatttcctatatactgaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGATGGAAAAGTTCTTTTTGGCAGTGATGGCACCTCAATGCTGTATAAGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG