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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattattacctgtttccagtctcttggattcagccacttccatattcatcattctttcgtatatattgtattcaattatgctgaagtttctttaatgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCCCCTTGAACCTCCGCTAGGATCCACTGCTGTAGTCCTTGATACCCCCGAC

Basic information

species Zea mays
transcript GRMZM2G011173_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011173_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os11g05650.1 (Oryza sativa), 3'ss of exon 5
gtatattattacctgtttccagtctcttggattcagccacttccatattcatcattctttcgtatatattgt-attcaattatgctgaagtttctttaatgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCCCCTTGAACCTCCGCTAGGATCCACTGCTGTAGTCCTTGATACCCCCGAC
                        | ||  ||     ||||||   ||  |   |  |    ||| ||     |||   ||| ||| |  |    |   || | ||||||| ||||||||| | || ||||| ||||||||||| ||||||||||| |||||||||||| ||| ||   ||||  || ||||   |||| | || || 
-----------------------gtttttcatctg--cacttctgaatggaaactagtaaaatatgtacaaagatttgcttaagctaagttcgtctagttggcaacagTGAGTTCGAGGAATTGGAGGCTGTGCCTACATCTGCAGCCATAGATGGTCCCCTTGAACCTTCGCCAGCGACCACCACTATAGTTTCTGATGCTCCTGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91050350|gb|EB160768.1|EB160768
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|89248124|gb|DY619910.1|DY619910
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|71419808|gb|DR804903.1|DR804903
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|71435432|gb|DR816482.1|DR816482
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|71320866|gb|DR797150.1|DR797150
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|76013659|gb|DT940829.1|DT940829
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|71313019|gb|DR793034.1|DR793034
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|67034610|gb|CO463160.1|CO463160
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|78091120|gb|DV519494.1|DV519494
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|74241849|gb|DT649763.1|DT649763
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|93016793|gb|EB642313.1|EB642313
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|71768256|gb|DR966193.1|DR966193
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|94477701|gb|EB706659.1|EB706659
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|101382184|gb|EB813148.1|EB813148
EST:     AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
EST: gi|87153649|gb|DY398438.1|DY398438
EST:     AACGCTTACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAG                         TGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC
genomic: AACGCATACGCCAAAGTACCTCCAAAACCGAAAGTGCCTTCCACAAAAAGgtatattatt ... atgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattctttcgtatatattgtattcaattatgctgaagtttctttaatgaccacagTGAATTCGAGGAACTAGAAGCTGTTCCTACATCTGCTGCCATAGATGGCCCCCTTGAACCTCCGCTAGGATCCACTGCTGTAGTCCTTGATACCCCCGAC
                                        ctttaat  putative branch site (score: 4)
          tatatattgtattcaa  TA-rich tract