1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattattcgttcatgcaacttttcttttcatcctgatgatacttatgtttatgagggatgattagaaatctacaatagcattggatgttttcatcatcctctgttttttctcatggtttcctaagacacattcttcattgtccacatcttgtagTATATCATCTTTCGTCGGGGCATTGGAATTGATCGAACAACTGACTACTTTTTCATTGAGAAAGTAGATGTAATGATATCCCGAGCTTGGAGGTCATTGC
species | Zea mays |
transcript | GRMZM2G011136_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATATTTTAAAGAGCACCCACATGACAATCTACCAGAGTTTTCAAACAAG TATATCATCTTTCGTCGGGGCATTGGAATTGATCGAACAACTGACTACTTTEST: gi|76916271|gb|DV166314.1|DV166314
genomic: AATATTTTAAAGAGCACCCACATGACAATCTACCAGAGTTTTCAAACAAGgtattattcg ... catcttgtagTATATCATCTTTCGTCGGGGCATTGGAATTGATCGAACAACTGACTACTTT
EST: AATATTTTAAAGAGCACCCACATGACAATCTACCAGAGTTTTCAAACAAG TATATCATCTTTCGTCGGGGCATTGGAATTGATCGAACAACTGACTACTTTEST: gi|9461499|gb|BE453763.1|BE453763
genomic: AATATTTTAAAGAGCACCCACATGACAATCTACCAGAGTTTTCAAACAAGgtattattcg ... catcttgtagTATATCATCTTTCGTCGGGGCATTGGAATTGATCGAACAACTGACTACTTT
EST: AATATTTTAAAGAGCACCCACATGACAATCTACCAGAGTTTTCAAACAAG TATATCATCTTTCGTCGGGGCATTGGAATTGATCGAACAACTGACTACTTT
genomic: AATATTTTAAAGAGCACCCACATGACAATCTACCAGAGTTTTCAAACAAGgtattattcg ... catcttgtagTATATCATCTTTCGTCGGGGCATTGGAATTGATCGAACAACTGACTACTTT
tctgttttttctcatggtttcctaagacacattcttcattgtccacatcttgtagTATATCATCTTTCGTCGGGGCATTGGAATTGATCGAACAACTGACTACTTTTTCATTGAGAAAGTAGATGTAATGATATCCCGAGCTTGGAGGTCATTGC
tttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattcgttcatgcaacttttcttttcatcctgatgatacttatgtttatgagggatgattagaaatctacaatagcattggatgttttcatcatcctctgttttttctcatggtttcctaagacacattcttcattgtccacatcttgtagTATATCATCTTTCGTCGGGGCATTGGAATTGATCGAACAACTGACTACTTTTTCATTGAGAAAGTAGATGTAATGATATCCCGAGCTTGGAGGTCATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG