1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtctggtccagtgtcctcatctcctgaagaataccgaactgaaccgcatcgcatcgcatcgcgcttagcaaacttactctgcttcaccaccgtgaccacttctcctccgcaatcgcagCTGGGGGCCTGCTGAACGCCACGTTCGGCAACGCCACGGAGCTGGTCATCTCCATCCACGCGCTGCGGAGCGGGAAGCTGCGGGTGGTGCAGCAGTCGCT
species | Zea mays |
transcript | GRMZM2G010779_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAGCTAGGGCTCTACACTGGCCGAACAG CTGGGGGCCTGCTGAACGCCACGTTCGGCAACGCCACGGAGCTGGTCATCTEST: gi|71439430|gb|DR820480.1|DR820480
genomic: GCAGCTAGGGCTCTACACTGGCCGAACAGgtctggtcca ... gcaatcgcagCTGGGGGCCTGCTGAACGCCACGTTCGGCAACGCCACGGAGCTGGTCATCT
EST: GCAGCTAGGGCTCTACACTGGCCGAACAG CTGGGGGCCTGCTGAACGCCACGTTCGGCAACGCCACGGAGCTGGTCATCTEST: gi|211176361|gb|FL398270.1|FL398270
genomic: GCAGCTAGGGCTCTACACTGGCCGAACAGgtctggtcca ... gcaatcgcagCTGGGGGCCTGCTGAACGCCACGTTCGGCAACGCCACGGAGCTGGTCATCT
EST: GCAGCTAGGGCTCTACACTGGCCGAACAG CTGGGGGCCTGCTGAACGCCACGTTCGGCAACGCCACGGAGC
genomic: GCAGCTAGGGCTCTACACTGGCCGAACAGgtctggtcca ... gcaatcgcagCTGGGGGCCTGCTGAACGCCACGTTCGGCAACGCCACGGAGC
cttagcaaacttactctgcttcaccaccgtgaccacttctcctccgcaatcgcagCTGGGGGCCTGCTGAACGCCACGTTCGGCAACGCCACGGAGCTGGTCATCTCCATCCACGCGCTGCGGAGCGGGAAGCTGCGGGTGGTGCAGCAGTCGCT
aacttac putative branch site (score: 10)
ccacttctcctccgc putative PPT
aaactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctggtccagtgtcctcatctcctgaagaataccgaactgaaccgcatcgcatcgcatcgcgcttagcaaacttactctgcttcaccaccgtgaccacttctcctccgcaatcgcagCTGGGGGCCTGCTGAACGCCACGTTCGGCAACGCCACGGAGCTGGTCATCTCCATCCACGCGCTGCGGAGCGGGAAGCTGCGGGTGGTGCAGCAGTCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC