Sequence
atgc intronic sequence ATGC exonic sequencegtttctatctgggattatttgtttcagttgttttggccaaagttggtccttcaaatgatattggtttgttttgttcatgcttgagtagGTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAGGAGGTCCTAACTGATGCCTGTTGGGCTCTATCATACCTATCTGATGGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G009845_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g06350.1 (Oryza sativa), 3'ss of exon 5
gtttctatctgggattatttgt-ttcagttgttttggccaaagtt--ggtccttcaaatgatattggtttgttttgttcatgcttgagtagGTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAGGAGGTCCTAACTGATGCCTGTTGGGCTCTATCATACCTATCTGATGGGA
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gtttaattctgggctaccttctactttgatgcactgacctaagtttttatcattaggatggttttg--ttgattt-tttgtgttcgagcagGTCAAACCAGCGCTTTCTGCACTGCAGCGCCTCATCCATTCTCAGGACGAGGAGGTCCTGACTGATGCCTGCTGGGCTCTTTCTTATTTGTCTGATGGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148966362|gb|EE017351.2|EE017351EST: GGACACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAG GTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAG
genomic: GGACACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAGgtttctatct ... gcttgagtagGTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAG
EST:
gi|31350199|gb|CD434556.1|CD434556EST: GCTCACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAG GTCAAACCAGCATTGCCAGCACTTCAGCCACTTATCCACTCTCAGGATGAG
genomic: G-ACACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAGgtttctatct ... gcttgagtagGTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAG
EST:
gi|32929275|gb|CF034087.1|CF034087EST: GGACACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAG GTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAG
genomic: GGACACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAGgtttctatct ... gcttgagtagGTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAG
EST:
gi|211010951|gb|FL253544.1|FL253544EST: ACACTATCAAACTTTCTGC-GTGGGGAAGCCACACCCGA-CTTTGATCAG GTCAAACCAGCATTGCCAGCACTTCA
genomic: ACACTATCAAACTT-CTGCCGTGGG-AAGCCACAACCGAACTTTGATCAGgtttctatct ... gcttgagtagGTCAAACCAGCATTGCCAGCACTTCA
EST:
gi|148994071|gb|EE033948.2|EE033948EST: GGACACTATCAAACTTCTGCCGTGGGAAGCCACAACCAAACTTTGATCAG GTCAAACCAGCATTGCCAGC
genomic: GGACACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAGgtttctatct ... gcttgagtagGTCAAACCAGCATTGCCAGC
EST:
gi|32928651|gb|CF033463.1|CF033463EST: GGACACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAG GTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAG
genomic: GGACACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAGgtttctatct ... gcttgagtagGTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
45 (upstream exon),
49 (downstream exon)
Score:
207GCAACAGCTTAATGAGCATGCTAAGCTCTCGATGCTGAGGAATGCCACATGGACACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAGgtttctatct ... gcttgagtagGTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAGGAGGTCCTAACTGATGCCTGTTGGGCTCTATCATACCTATCTGATGGGA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
216GCAACAGCTTAATGAGCATGCTAAGCTCTCGATGCTGAGGAATGCCACATGGACACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAGgtttctatct ... gcttgagtagGTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAGGAGGTCCTAACTGATGCCTGTTGGGCTCTATCATACCTATCTGATGGGA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
212GCAACAGCTTAATGAGCATGCTAAGCTCTCGATGCTGAGGAATGCCACATGGACACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAGgtttctatct ... gcttgagtagGTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAGGAGGTCCTAACTGATGCCTGTTGGGCTCTATCATACCTATCTGATGGGA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
162GCAACAGCTTAATGAGCATGCTAAGCTCTCGATGCTGAGGAATGCCACATGGACACTATCAAACTTCTGCCGTGGGAAGCCACAACCGAACTTTGATCAGgtttctatct ... gcttgagtagGTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAGGAGGTCCTAACTGATGCCTGTTGGGCTCTATCATACCTATCTGATGGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggccaaagttggtccttcaaatgatattggtttgttttgttcatgcttgagtagGTCAAACCAGCATTGCCAGCACTTCAGCAACTTATCCACTCTCAGGATGAGGAGGTCCTAACTGATGCCTGTTGGGCTCTATCATACCTATCTGATGGGA
aaatgatatt TA-rich tract