1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaaggactgccagaaacgctagctgagtagctgagacattgtatatccacctgacttccttagatgatcatgacggaactcattatatgttttcagATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAG
species | Zea mays |
transcript | GRMZM2G009030_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCGAAGACAACTTCATCGCAGATTTGGCTGTTGGCTTAGCAAGTGGGCAG ATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAGEST: gi|76290554|gb|DV030122.1|DV030122
genomic: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAGgtaaaggact ... atgttttcagATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAG
EST: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAG ATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAGEST: gi|22819501|gb|BU499591.1|BU499591
genomic: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAGgtaaaggact ... atgttttcagATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAG
EST: CCGAAGACAACTTCATCGCAGATTTGGCTGTTGGCTTAGCAAGTGGGCAG ATTAAAACCGGGGCTCCATGCCGCAGCGAGEST: gi|76011516|gb|DT938686.1|DT938686
genomic: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAGgtaaaggact ... atgttttcagATTAAAACCGGGGCTCCATGCCGCAGCGAG
EST: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAG ATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAGEST: gi|166632552|gb|EG255936.1|EG255936
genomic: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAGgtaaaggact ... atgttttcagATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAG
EST: CCGAAGACAACTTCATCGCAGATTTGGCTGTTGGCTTAGCAAGTGGGCAG ATTAAAACTGGGGCTCCATGCCGEST: gi|33102792|gb|CF062752.1|CF062752
genomic: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAGgtaaaggact ... atgttttcagATTAAAACCGGGGCTCCATGCCG
EST: CCGAAGACAACTTCATCGCAGATTTGGCTGTTGGCTTAGCAAGTGGGCAG ATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAGEST: gi|149004756|gb|EE039253.2|EE039253
genomic: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAGgtaaaggact ... atgttttcagATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAG
EST: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAG ATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAGEST: gi|76290528|gb|DV030096.1|DV030096
genomic: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAGgtaaaggact ... atgttttcagATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAG
EST: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAG ATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAGEST: gi|7135894|gb|AW498320.1|AW498320
genomic: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAGgtaaaggact ... atgttttcagATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAG
EST: CCGAAGACAACTTCATCGCAGATTTGGCTGTTGGCTTAGCAAGTGGGCAG ATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAGEST: gi|87156544|gb|DY401333.1|DY401333
genomic: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAGgtaaaggact ... atgttttcagATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAG
EST: CCGAAGACAACTTCATCGCAGATTTGGCTGTTGGCTTAGCAAGTGGGCAG ATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAG
genomic: CCGAAGACAACTTCATCGCAGATTTGGCTATTGGCTTAGCAAGTGGGCAGgtaaaggact ... atgttttcagATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAG
tatatccacctgacttccttagatgatcatgacggaactcattatatgttttcagATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAG
acctgac putative branch site (score: 523)
tgttttc putative PPT
tcattatatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaggactgccagaaacgctagctgagtagctgagacattgtatatccacctgacttccttagatgatcatgacggaactcattatatgttttcagATTAAAACCGGGGCTCCATGCCGCAGCGAGAGGCTGGCCAAATACAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG