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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctatgattgtgctggcattaaatttcttattctgtatttgcgtattttagacctgtctgactttgtttgtgtcattgccactgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG

Basic information

species Zea mays
transcript GRMZM2G008327_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008327_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g02680.1 (Oryza sativa), 3'ss of exon 4
gttctatgattgtgctggcattaaatttctt-attctgt-atttgcgtattttagacctgtctgactt-tgt-ttgtgtcattgccactgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG
||||||| ||||| |||  ||||  ||| ||  |||||| | ||| || |||   | || | ||| || ||| ||||||  | |  |||  |||||| ||||||| || || ||||| || |||||||||||||| || |  || ||||||| |||| | |||||||||| ||||||||| |||
gttctattattgtactgagattacctttttttgttctgttaattgtgtttttgccaactctatgatttatgtgttgtgttctggttacttttgaagGGTACTAGGAACTCCAAATGAACAAAGTTGGCCAGGAGTTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAG

upper sequence: GRMZM2G008327_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g01850.2 (Oryza sativa), 3'ss of exon 5
gttctatgattgtgctggcattaaatttctt-attctgt-atttgcgtattttagacctgtctgactt-tgtt-tgtgtcattgccactgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG
||||||| || || |||  ||||  ||| ||  |||||| ||||| || |||   | || ||||| || |||  |||||  | |  |||  |||||| ||||||| || || ||||| || |||||||||||||| || |  || ||||||| |||| | |||||||||| |||||| || |||
gttctattatcgtactgagattacctttttttgttctgttatttgtgtttttgccaactctctgatttatgtggtgtgttctggttacttttgaagGGTACTAGGAACTCCAAATGAACAAAGTTGGCCAGGAGTTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78089349|gb|DV517723.1|DV517723
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|18174097|gb|BM349485.1|BM349485
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|60394106|gb|DN226976.1|DN226976
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|4609857|gb|AI600696.1|AI600696
EST:     GAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: GAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|87152029|gb|DY396818.1|DY396818
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGC
EST: gi|76017100|gb|DT944270.1|DT944270
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|5525740|gb|AI861633.1|AI861633
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|211440494|gb|FL452489.1|FL452489
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACMCCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|76017014|gb|DT944184.1|DT944184
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|211200718|gb|FL344211.1|FL344211
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|149096226|gb|EE181929.2|EE181929
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACCCCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|18171336|gb|BM341176.1|BM341176
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|18166325|gb|BM336164.1|BM336164
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|60394498|gb|DN227368.1|DN227368
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|31362736|gb|CD447093.1|CD447093
EST:     CCACTATTCCCTGNCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|60345525|gb|DN212498.1|DN212498
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|60346409|gb|DN213382.1|DN213382
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|86470531|gb|DY236901.1|DY236901
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|148933262|gb|EC876914.2|EC876914
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACCCCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|211484592|gb|FL266361.1|FL266361
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|60397309|gb|DN230125.1|DN230125
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|4966783|gb|AI691639.1|AI691639
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATCCTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|50337361|gb|CO532487.1|CO532487
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|71768728|gb|DR966665.1|DR966665
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|60352073|gb|DN219046.1|DN219046
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|50323180|gb|CO518306.1|CO518306
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACCCCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|5739730|gb|AI947306.1|AI947306
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|61118625|gb|DN559586.1|DN559586
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|17930906|gb|BM267866.1|BM267866
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|17930325|gb|BM267285.1|BM267285
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|93281356|gb|EB673620.1|EB673620
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|6526696|gb|AW215985.1|AW215985
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|7204594|gb|AW559177.1|AW559177
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|83278334|gb|DV942342.1|DV942342
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
EST: gi|18163033|gb|BM332872.1|BM332872
EST:     CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAG                         GATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC
genomic: CCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 119

TTGATGTGTGGTCTGTGGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 43

TTGATGTGTGGTCTGTGGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 70

TTGATGTGTGGTCTGTGGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 33

TTGATGTGTGGTCTGTGGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGCGATTCTGAGATCGACGAACTTTTTAAGATATTCAGgttctatgat ... actgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgcgtattttagacctgtctgactttgtttgtgtcattgccactgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG
                    gtctgac  putative branch site (score: 33)
        tattttaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttctatgattgtgctggcattaaatttcttattctgtatttgcgtattttagacctgtctgactttgtttgtgtcattgccactgctgaagGATACTAGGTACACCGAATGAGCAGAGTTGGCCAGGAGTCAGTTGTTTGCCTGACTTCAAGACAGCTTTCCCCAGGTGGCAAGCTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA