1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtataatcaaatcaccgtttttgcgtgttactaacaacaattgcttcagcatacgcccttgagtttcatttgatatcaggtggatacctcactgttctttagGGCATGGTTCAAGACTTTGCAGCTTTGGATGGTCTTTTGGCTAAAGACAGGATGAG
species | Zea mays |
transcript | GRMZM2G007339_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTCTGTATGGAACTTCTTGAATTTGGTTCTTTATCATGCATG GGCATGGTTCAAGACTTTGCAGCTTTGGATGGTCTTTTGGCTAAAGACAGGEST: gi|78545066|gb|DV622564.1|DV622564
genomic: GTTTCTGTATGGAACTTCTTGAATTTGGTTCTTTATCATGCATGgtaagtataa ... tgttctttagGGCATGGTTCAAGACTTTGCAGCTTTGGATGGTCTTTTGGCTAAAGACAGG
EST: CAACATGTTTCTGTATGGAACTTCTTGAATTTGGTTCTTTATCATGCATG GGCATGGTTCAAGACTTTGCAGCTTTGGATGGTCTTTTGGCTAAAGACAGG
genomic: CAACATGTTTCTGTATGGAACTTCTTGAATTTGGTTCTTTATCATGCATGgtaagtataa ... tgttctttagGGCATGGTTCAAGACTTTGCAGCTTTGGATGGTCTTTTGGCTAAAGACAGG
agcatacgcccttgagtttcatttgatatcaggtggatacctcactgttctttagGGCATGGTTCAAGACTTTGCAGCTTTGGATGGTCTTTTGGCTAAAGACAGGATGAG
acctcac putative branch site (score: 24)
cctcactgttcttt CT-rich tract
atttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtataatcaaatcaccgtttttgcgtgttactaacaacaattgcttcagcatacgcccttgagtttcatttgatatcaggtggatacctcactgttctttagGGCATGGTTCAAGACTTTGCAGCTTTGGATGGTCTTTTGGCTAAAGACAGGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG