Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aataacatatgccagccctgagttgcgtcaggacttactgtcgctacaatgttgcaaagtgtacctctctgtttctgaaaaccgattgtttctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATCGTGCGGAAATCACAGGAAATGTTATGAAGAAAATGGAATACTGGGGAAG

Basic information

species Zea mays
transcript GRMZM2G007300_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 3
aataacatatgccagccctgagttgcgtcaggacttactgtcgctacaatgttgcaaagtgtacctctctgtttctgaaaaccgattgtt--tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATCGTGCGGAAATCACAGGAAATGTTATGAAGAAAATGG-AATACTGGGGAAG
   |||| |    |      |||   | ||   | || |||   |    || ||    ||| |||| |  |||    |   | |  |  |  ||| | ||||||||||||||| || |||||||| || |||||||||| ||| |||||| | ||  |||||||||| |||||| | ||||||||  || | |||||||||| 
ttaaacacacagaaaattgtagtcaggacaatgcgtagtgtattttgcctgctgtttggtggaccttt--gttctgaacttctgcctactgttcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTGTAAGGAAATCACAAGAAATGCTCTGAAGAAACCGGCAGTACTGGGGAA-

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA11G14980.1 (Glycine max), 3'ss of exon 5
aataacatatgccagccctga-gttgcgtcaggac-ttactgtcgctacaatgttgcaaagtgtacctctctgtttctgaaaaccgattgtttctcgt---gcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATCGTGCGGAAATCACAGGAAATGTTATGAAGAAAATGGAATACTGGGGAAG
     | ||    |||| |   |     |  | |  | |   | | |||   ||   |||||     |   |  ||||||   | |  || |  | ||   ||||||||| ||||| |||| |||||| ||||||||||||| ||| || ||   |||  |||| ||||| |||||||| |||          || |     |  
---ggcctacaagagcctttttgacatttttgtatgtcatccttgatacctagtctgaaagttcttttgatttgttctgac--ctgtatgatcttggtattgcagAAGGAGTGGAGAGATAGGAGGGATGATTTCAAGAAAAAGGTTAGCCGATGCGTAAGGAAGTCACAAGAAATGTTGTGATTCGTCGCCTATGCCTCATACT

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 3'ss of exon 5
-aataacatatgccagccctgagttgcgtcaggacttactgtcgctacaatgttgcaaagtgtacctctctgtttctgaaaaccgattgtttctcgt-gcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATCGTGCGGAAATCACAGGAAATGTTATGAAGAAAATGGAATACTGGGGAAG
 | |   ||          |   || | |  | |  ||  |    |   ||      |||  |   | |||       |    ||  | | | |  | ||||||||||||||| |||| |||||| || |||||||||| ||| ||  |    ||| |    ||||| |||||||| | ||    | | |   ||    |  
tatttgtattattttttttttcctttcat-ggaatataaagaaatttggat-caatgaagcttttttttcttacctgtattggcgtctctatataattgcagAAGGAATGGAGAGATAGGAGGGATGAATTCAAGAAAAAGGTGAGCAGATGTGTGAGACGGTCACAAGAAATGTTTTAAACTGCAGGCACAGCTTCTTACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4967158|gb|AI692076.1|AI692076
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|116815280|gb|EC857946.1|EC857946
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCACGAAAACGGTCACGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|211372793|gb|FL445592.1|FL445592
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|8273196|gb|BE012285.1|BE012285
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|4887473|gb|AI677572.1|AI677572
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|60348385|gb|DN215358.1|DN215358
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|50334256|gb|CO529382.1|CO529382
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|32858948|gb|CD998629.1|CD998629
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|67023819|gb|CO452568.1|CO452568
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|60359320|gb|DN226293.1|DN226293
EST:     CAATGCTCTTTAGTCCAAATGACGAGTTTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|32863929|gb|CF003611.1|CF003611
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|60349828|gb|DN216801.1|DN216801
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|33093470|gb|CF053464.1|CF053464
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCGAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|116825457|gb|EC869181.1|EC869181
EST:     CAATGCTCTCTAGTCCAAATGACCAGTCTGCAGCAAACATTGAAGCAGCT                         AAGGAATGGAGGGA
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGA
EST: gi|211365065|gb|FL116003.1|FL116003
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGG
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGG
EST: gi|116827436|gb|EC871337.1|EC871337
EST:     CCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGA-TTC-AGAAAAGGGTCAGGCGCATC
genomic: CCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|32910629|gb|CF015441.1|CF015441
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|60341687|gb|DN208660.1|DN208660
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|71596065|gb|DR906816.1|DR906816
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|32863732|gb|CF003414.1|CF003414
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|87153235|gb|DY398024.1|DY398024
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|19822690|gb|BQ048714.1|BQ048714
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|18450508|gb|BM428786.1|BM428786
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGTGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|50334257|gb|CO529383.1|CO529383
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGG
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGG
EST: gi|211530486|gb|FK952738.1|FK952738
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|32909923|gb|CF014735.1|CF014735
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAG
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAG
EST: gi|6012446|gb|AW061883.1|AW061883
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|84980854|gb|DW531203.1|DW531203
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|16920121|gb|BM074510.1|BM074510
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|6021313|gb|AW066241.1|AW066241
EST:     TGCTCCTCCTAAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: TGCTC-TC-TA-GTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|67022558|gb|CO451307.1|CO451307
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|83278514|gb|DV942522.1|DV942522
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|84980470|gb|DW530819.1|DW530819
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|60342711|gb|DN209684.1|DN209684
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|84980533|gb|DW530882.1|DW530882
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|32863930|gb|CF003612.1|CF003612
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCAT
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCAT
EST: gi|116814603|gb|EC857188.1|EC857188
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCGGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|211533492|gb|FK952752.1|FK952752
EST:     AATGCTCTMTAGTCCAAATGACGAGTCTGCARCAAACATTGAGGCAAGCT                         AAGGAATGGAGGGATAAGAGG
genomic: AATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCA-GCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGG
EST: gi|211365077|gb|FL116015.1|FL116015
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AACGAATGGAGGGATAAGCACGGAGGATTTCAAGAAAAGGGTCACGCGCAT
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAG-AGGGAGGATTTCAAGAAAAGGGTCAGGCGCAT
EST: gi|33096528|gb|CF056522.1|CF056522
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|18450509|gb|BM428787.1|BM428787
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|88753890|gb|DY538031.1|DY538031
EST:     CAATGCTCTCTAGTCCAAATGACGAGTTTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|14203751|gb|BG837428.1|BG837428
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGYTCAGGCGCAT
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGG-TCAGGCGCAT
EST: gi|211530488|gb|FK952740.1|FK952740
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGGAGGGAGGATTTCAANGAAA-GGGTCAGGCGCA
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAG-AGGGAGGATTTCAA-GAAAAGGGTCAGGCGCA
EST: gi|213167661|gb|FM185219.1|FM185219
EST:     GCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: GCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
EST: gi|211365066|gb|FL116004.1|FL116004
EST:     CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT                         AAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC
genomic: CAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCTgtaagtttga ... tctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaatgttgcaaagtgtacctctctgtttctgaaaaccgattgtttctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATCGTGCGGAAATCACAGGAAATGTTATGAAGAAAATGGAATACTGGGGAAG
                                        ttgtttctc  CT-rich tract
                                       attgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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aataacatatgccagccctgagttgcgtcaggacttactgtcgctacaatgttgcaaagtgtacctctctgtttctgaaaaccgattgtttctcgtgcagAAGGAATGGAGGGATAAGAGGGAGGATTTCAAGAAAAGGGTCAGGCGCATCGTGCGGAAATCACAGGAAATGTTATGAAGAAAATGGAATACTGGGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
aataaca
- - - - -tgccagc
- - - - - - - - - - - - - - - - -cttactg
- - - - - - - - - - - - - - - - - - - - -cgctaca
- - - - - - - - - - - - - - - - - - - - - - - - -tgttgca