1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgaacatgcggtgtaatgaagaatatttatgacttttatattgtagagattatgttatgtatgtatccagtatggcagtattcaccccaccaaacactctagtttcacccccaaattgcttgacatatccatcctgagcacaaatttatctaaacggtcaattcattttctactacagTTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTCAGCGAGTCAGAATTGCGCTTACAG
species | Zea mays |
transcript | GRMZM2G006781_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCAATCATTAGTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAG TTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTCEST: gi|148979834|gb|EE026851.2|EE026851
genomic: TGCAATCATTAGTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAGgtgaacatgc ... tctactacagTTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTC
EST: TGCAATCATTAGTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAG TTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTCEST: gi|71305530|gb|DR788908.1|DR788908
genomic: TGCAATCATTAGTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAGgtgaacatgc ... tctactacagTTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTC
EST: TGCAATCATTAGTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAG TTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTCEST: gi|86469576|gb|DY235946.1|DY235946
genomic: TGCAATCATTAGTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAGgtgaacatgc ... tctactacagTTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTC
EST: TGCACTCATTATTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAG TTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTCEST: gi|148963434|gb|EE014450.2|EE014450
genomic: TGCAATCATTAGTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAGgtgaacatgc ... tctactacagTTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTC
EST: TGCAATCATTAGTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAG TTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTCEST: gi|148999331|gb|EE036267.2|EE036267
genomic: TGCAATCATTAGTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAGgtgaacatgc ... tctactacagTTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTC
EST: TGCAATCATTAGTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAG TTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTCEST: gi|71449856|gb|DR830906.1|DR830906
genomic: TGCAATCATTAGTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAGgtgaacatgc ... tctactacagTTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTC
EST: TGCAATCATTAGTTTCACAGCTTCTCTAGAAACTTCGATCAAATATTCAG TTACCTGAGTG
genomic: TGCAATCATTAGTTTCACAGCTTCTCCAGAAACTTCGATCAAATATTCAGgtgaacatgc ... tctactacagTTACCTGAGTG
catatccatcctgagcacaaatttatctaaacggtcaattcattttctactacagTTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTCAGCGAGTCAGAATTGCGCTTACAG
atctaaa putative branch site (score: 93)
ttcattttct putative PPT
acaaatttatctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaacatgcggtgtaatgaagaatatttatgacttttatattgtagagattatgttatgtatgtatccagtatggcagtattcaccccaccaaacactctagtttcacccccaaattgcttgacatatccatcctgagcacaaatttatctaaacggtcaattcattttctactacagTTACCTGAGTGCCTACGAATTGTAGCACATCTGCGCCGAATTGGAGTTTTCAGCGAGTCAGAATTGCGCTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG