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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttcatccccacagaacacttgaggcggctaaaatcccttactattcaatagctccctcaaatccctttcttccaaacaagcccttaggtgtcagtgttacattccgctaccatttgcttgtttccaactgatcgttgtcttgaactccatggtagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCGCAGGGCTGAGCGGAAAAAACAGTTCAACTCCATCCTCTCGAACATCATG

Basic information

species Zea mays
transcript GRMZM2G006753_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006753_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 3'ss of exon 7
gtaagttttcatccccacagaacacttgaggcggctaaaatcccttactattcaatagctccctcaaatccctttcttccaaacaagcccttaggtgtcagtgttacattccgctaccatttgcttgtttccaactgatcgttgtcttgaactccatggtagGAAG---AGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCGCAGGGCTGAGCGGAAAAAACAGTTCAACTCCATCCTCTCGAACATCATG
                                                       ||   | ||||    | | ||| ||||  || ||    |   || | | |    ||  | | || |||||   | |    |     ||| ||  |||  | |   ||||||   | |||||| || |||||||| |||||||| || || |||||||||||||||||  |||||||  | | |||| ||||  | |||||   ||||   
------------------------------------------------------gtaag-ctctcattctcttatctcccaagtaatcc----gccttccgagatgttgtctaccatcagttgctcactactgcat-----ttgcctcaaacctcgtcacagGAAGAACAAGAAGAAGAGCGAGGAGAACGATCTGATCCTCGCGATCTCACAGCGCAGGGCGCAGCGGAAGGACCGGTTCGACTCGGTGCTCTCATCCATC---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccgctaccatttgcttgtttccaactgatcgttgtcttgaactccatggtagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCGCAGGGCTGAGCGGAAAAAACAGTTCAACTCCATCCTCTCGAACATCATG
                         aactgat  putative branch site (score: 3)