1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatggccggattgtgatactgctcttaattaagtagcaattattgatgaattatttaaccgctcagtctacctacttgaaaagaaaacactacttgtcatcatttttgctgcactaactttgtttcttgtttctgcaccatgctgtaatgaacacgcctgcagACGCTGAGAAGGCTGGCCCAGAACAGGGAGGCTGCAAGGAAAAGCAGGCTAAGGAAGAAG
species | Zea mays |
transcript | GRMZM2G006578_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGATCACAGGAGAGGCACATCGACCGCTGAACGCGACCCAAAA ACGCTGAGAAGGCTGGCCCAGAACAGGGAGGCTGCAAGGAAAAGCAGGCTAEST: gi|149110645|gb|EE190527.2|EE190527
genomic: AAGGATCACAGGAGAGGCACATCGACCGCTGAACGCGACCCAAAAgtatggccgg ... acgcctgcagACGCTGAGAAGGCTGGCCCAGAACAGGGAGGCTGCAAGGAAAAGCAGGCTA
EST: AAGGATCACAGGAGAGGCACATCGACCGCTGAACGCGACCCAAAA ACGCTGAGAAGGCTGGCCCAGAACAGGGAGGCTGCAAGGAAAAGCAGGCTAEST: gi|148961657|gb|EE012426.2|EE012426
genomic: AAGGATCACAGGAGAGGCACATCGACCGCTGAACGCGACCCAAAAgtatggccgg ... acgcctgcagACGCTGAGAAGGCTGGCCCAGAACAGGGAGGCTGCAAGGAAAAGCAGGCTA
EST: AAGGATCACAGGAGAGGCACATCGACCGCTGAACGCGACCCAAAA ACGCTGAGAAGGCTGGCCCAGAACAGGGAGGCTGCAAGGAAAAGCAGGCTA
genomic: AAGGATCACAGGAGAGGCACATCGACCGCTGAACGCGACCCAAAAgtatggccgg ... acgcctgcagACGCTGAGAAGGCTGGCCCAGAACAGGGAGGCTGCAAGGAAAAGCAGGCTA
ctgcactaactttgtttcttgtttctgcaccatgctgtaatgaacacgcctgcagACGCTGAGAAGGCTGGCCCAGAACAGGGAGGCTGCAAGGAAAAGCAGGCTAAGGAAGAAG
cactaac putative branch site (score: 1)
taacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggccggattgtgatactgctcttaattaagtagcaattattgatgaattatttaaccgctcagtctacctacttgaaaagaaaacactacttgtcatcatttttgctgcactaactttgtttcttgtttctgcaccatgctgtaatgaacacgcctgcagACGCTGAGAAGGCTGGCCCAGAACAGGGAGGCTGCAAGGAAAAGCAGGCTAAGGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG