1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaccaatctagttgactgatctgtaagaacaaactaatgcattttcagtgggtagaccattgacattaataaagtagaaacatccggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG
species | Zea mays |
transcript | GRMZM2G006468_T05 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCEST: gi|60355084|gb|DN222057.1|DN222057
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|5895762|gb|AW037008.1|AW037008
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|74242180|gb|DT650094.1|DT650094
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|13178078|gb|BG349336.1|BG349336
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCEST: gi|31250432|gb|CD219456.1|CD219456
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
EST: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG ATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
genomic: TAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAGgtaccaatct ... ggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCC
attttcagtgggtagaccattgacattaataaagtagaaacatccggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG
cattaat putative branch site (score: 3)
attaataaagtagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccaatctagttgactgatctgtaagaacaaactaatgcattttcagtgggtagaccattgacattaataaagtagaaacatccggcactgcagATTGATGATTCTACAGACAGCATCACCTTCGATCTTCGGCCTTCAGATGCCATAAACATTGCTGTTCGTTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT