1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatcttaattcgtaagcctttgttgcagttatgcttatttaatcaaggagaagttaacttaattcatcttcttatcccttttatcttgatggtggttttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG
species | Zea mays |
transcript | GRMZM2G006468_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|14244855|gb|BG842793.2|BG842793
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: TAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|16925921|gb|BM078989.1|BM078989
genomic: TAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: NACCATATATCAAGTTGTCAAGGAAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|76010925|gb|DT938095.1|DT938095
genomic: -ACCATATATCAAGTTGTCAAGG-AAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|5895762|gb|AW037008.1|AW037008
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|14243138|gb|BG840841.2|BG840841
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: TATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|14242681|gb|BG840373.2|BG840373
genomic: TATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: AACCATATATCAAGTTGTCAAGGAAATGATTGANTAAA-TGGGCTATGAG GTAAAACTTGTTCGGGTAAAEST: gi|211436012|gb|FL361903.1|FL361903
genomic: AACCATATATCAAGTTGTCAAGGAAATGATTGA-TAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGAATGATAAATTGGGCTATGAG GTAAAACTTGTTCGGGTAAACEST: gi|211186703|gb|FL252848.1|FL252848
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAAC
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAEST: gi|13178078|gb|BG349336.1|BG349336
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|211186706|gb|FL252851.1|FL252851
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: AAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|71774336|gb|DR972214.1|DR972214
genomic: AAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|60346391|gb|DN213364.1|DN213364
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|89755425|gb|DY685846.1|DY685846
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: AAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|76010926|gb|DT938096.1|DT938096
genomic: AAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|60355084|gb|DN222057.1|DN222057
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|211436290|gb|FL481825.1|FL481825
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|74242180|gb|DT650094.1|DT650094
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|60358728|gb|DN225701.1|DN225701
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|13178561|gb|BG349819.1|BG349819
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: ATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|13177698|gb|BG349129.1|BG349129
genomic: ATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: AAATGGGCTATGAG GT-AAACTTGTTCGGGT-AGCAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|71774337|gb|DR972215.1|DR972215
genomic: AAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|78113266|gb|DV531659.1|DV531659
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAAEST: gi|211505179|gb|FL436188.1|FL436188
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
EST: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG GTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaa ... ttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAA
gttaacttaattcatcttcttatcccttttatcttgatggtggttttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG
ttaattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcttaattcgtaagcctttgttgcagttatgcttatttaatcaaggagaagttaacttaattcatcttcttatcccttttatcttgatggtggttttgggttcagGTAAAACTTGTTCGGGTAAACAAAAGAATTCAAGAAGCGTACTGTGCTGAACTTTGTCTAACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC