Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttacctcttaactttgtttggcgggatttattcttcttgtgctttatgaaatggacctaaggtattttggtacatattttgccagTGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAGCACTTGTGATCCTCATGCGAGCAAATTTGTAATAAACTCTGATTCTCCT

Basic information

species Zea mays
transcript GRMZM2G006117_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929714|gb|CF034526.1|CF034526
EST:     GATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAG                         TGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAG
genomic: GATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAGgtttacctct ... attttgccagTGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAG
EST: gi|149106813|gb|EE188710.2|EE188710
EST:     GATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAG                         TGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAG
genomic: GATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAGgtttacctct ... attttgccagTGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAG
EST: gi|76018555|gb|DT945725.1|DT945725
EST:     GATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAG                         TGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAG
genomic: GATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAGgtttacctct ... attttgccagTGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttcttgtgctttatgaaatggacctaaggtattttggtacatattttgccagTGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAGCACTTGTGATCCTCATGCGAGCAAATTTGTAATAAACTCTGATTCTCCT
                                              ttttgcc  CT-rich tract
            tttatgaaat  TA-rich tract