1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agttttatttgtttgatgtaattctaccttccatgtatggttccagattcttgtgttacatcttgttttgaaaatgactatgatttcaactatggtacagGGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG
species | Zea mays |
transcript | GRMZM2G006107_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAGGTGACATTGCAAAAGAAAATG GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAGEST: gi|94479119|gb|EB708077.1|EB708077
genomic: GGAGGTGACATTGCAAAAGAAAATGgtgagtttac ... tatggtacagGGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG
EST: GGAGGTGACATTGCAAAAGAAAATG GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAGEST: gi|211075041|gb|FL431329.1|FL431329
genomic: GGAGGTGACATTGCAAAAGAAAATGgtgagtttac ... tatggtacagGGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG
EST: TATGGCACAAGGAGGTGACATTGCAAAAGAAAATG GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAGEST: gi|211294918|gb|FL414861.1|FL414861
genomic: TATGGCACAAGGAGGTGACATTGCAAAAGAAAATGgtgagtttac ... tatggtacagGGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG
EST: TATGGCACAAGGAGGTGACATTGCAAAAGAAAATG GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAGEST: gi|33467794|gb|CF244843.1|CF244843
genomic: TATGGCACAAGGAGGTGACATTGCAAAAGAAAATGgtgagtttac ... tatggtacagGGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG
EST: GGAGGTGACATTGCAAAAGAAAATG GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAGEST: gi|211294917|gb|FL414860.1|FL414860
genomic: GGAGGTGACATTGCAAAAGAAAATGgtgagtttac ... tatggtacagGGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG
EST: TATGGCACAAGGAGGTGACATTGCAAAAGAAAATG GGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG
genomic: TATGGCACAAGGAGGTGACATTGCAAAAGAAAATGgtgagtttac ... tatggtacagGGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG
gattcttgtgttacatcttgttttgaaaatgactatgatttcaactatggtacagGGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG
ttttgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttttatttgtttgatgtaattctaccttccatgtatggttccagattcttgtgttacatcttgttttgaaaatgactatgatttcaactatggtacagGGTCTGGTGGTGAAAACATATATAGTGGAAAATTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA