1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtataaacacatatatgctttttcagctgaatcgagatgaaactgaattttgcgatacacaagaccacctaatacatgtctctatgaaactgtgccggcgcaataatgcagAGTGGTATCGTTCCTCCTCTGGTTCCATTCGCTCAGACGTTCGCGGCAGTCATCACTGCAGCCCTCACAGGAACCCTCTACTACGTCGCCACAACTCCGA
species | Zea mays |
transcript | GRMZM2G005859_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCTGAGAAGCACGGAGCTAATGAAGGATGCTCGAGGGATTGCATCACTG AAGTGGTATCGEST: gi|71445181|gb|DR826231.1|DR826231
genomic: TCCTGAGAAGCACGGAGCTAATGAAGGATGCTCGAGGGATTGCATCACTGgtataaacac ... aataatgcagA-GTGGTATCG
EST: TCCTGAGAAGCACGGAGCTAATGAAGGATGCTCGAGGGATTGCATCACTG AGTGGTATCGTTCCTCCTCTGGTTCCATTCGCTCAGACGGTCGCGGCAGTCEST: gi|76290855|gb|DV030423.1|DV030423
genomic: TCCTGAGAAGCACGGAGCTAATGAAGGATGCTCGAGGGATTGCATCACTGgtataaacac ... aataatgcagAGTGGTATCGTTCCTCCTCTGGTTCCATTCGCTCAGACGTTCGCGGCAGTC
EST: TCCTGAGAAGCACGGAGCTAATGAAGGATGCTCGAGGGATTGCATCACTG AGTGGTATCGTTCCTCCTCTGGGTTC-ATTCGCTCAGACGTTCGCGGCAGTEST: gi|78091085|gb|DV519459.1|DV519459
genomic: TCCTGAGAAGCACGGAGCTAATGAAGGATGCTCGAGGGATTGCATCACTGgtataaacac ... aataatgcagAGTGGTATCGTTCCTCCTCTGG-TTCCATTCGCTCAGACGTTCGCGGCAGT
EST: TCCTGAGAAGCACGGAGCTAATGAAGGATGCTCGAGGGATTGCATCACTG AGTGGTATCGTTCCTCCTCTGGNTTC-ATTCGCTCAGACGTTCGCGGCAGT
genomic: TCCTGAGAAGCACGGAGCTAATGAAGGATGCTCGAGGGATTGCATCACTGgtataaacac ... aataatgcagAGTGGTATCGTTCCTCCTCTGG-TTCCATTCGCTCAGACGTTCGCGGCAGT
acacaagaccacctaatacatgtctctatgaaactgtgccggcgcaataatgcagAGTGGTATCGTTCCTCCTCTGGTTCCATTCGCTCAGACGTTCGCGGCAGTCATCACTGCAGCCCTCACAGGAACCCTCTACTACGTCGCCACAACTCCGA
acctaat putative branch site (score: 3)
taatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaacacatatatgctttttcagctgaatcgagatgaaactgaattttgcgatacacaagaccacctaatacatgtctctatgaaactgtgccggcgcaataatgcagAGTGGTATCGTTCCTCCTCTGGTTCCATTCGCTCAGACGTTCGCGGCAGTCATCACTGCAGCCCTCACAGGAACCCTCTACTACGTCGCCACAACTCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG