1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaatatcacccttattttgagttaatgttttaactcccttacccttcaaacatcatgttgttttattgttagtagtttttgatgatagatctgctagacatcactcctttttaatcatattctgaatcagatgatccctaaatgcatcaatttttaatcaaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
species | Zea mays |
transcript | GRMZM2G003692_T06 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCT AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGEST: gi|37401832|gb|CF638282.1|CF638282
genomic: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCTgtaaatatca ... caaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
EST: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCT AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGEST: gi|32840502|gb|CD980183.1|CD980183
genomic: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCTgtaaatatca ... caaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
EST: GCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCT AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGEST: gi|40337101|gb|CK371171.1|CK371171
genomic: GCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCTgtaaatatca ... caaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
EST: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCT AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGEST: gi|71298091|gb|DR785023.1|DR785023
genomic: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCTgtaaatatca ... caaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
EST: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCT AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGEST: gi|37397592|gb|CF636096.1|CF636096
genomic: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCTgtaaatatca ... caaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
EST: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCT AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGEST: gi|71311062|gb|DR791845.1|DR791845
genomic: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCTgtaaatatca ... caaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
EST: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCT AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGEST: gi|14208321|gb|BG842006.1|BG842006
genomic: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCTgtaaatatca ... caaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
EST: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCT AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGEST: gi|32856130|gb|CD995811.1|CD995811
genomic: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCTgtaaatatca ... caaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
EST: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCT AAACGGAGGGCTCTAGAAGAGAGTGAGGAAGGTCTTAAGEST: gi|14244326|gb|BG842296.2|BG842296
genomic: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCTgtaaatatca ... caaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
EST: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCT AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGEST: gi|71311060|gb|DR791844.1|DR791844
genomic: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCTgtaaatatca ... caaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
EST: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCT AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAGEST: gi|71438969|gb|DR820019.1|DR820019
genomic: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCTgtaaatatca ... caaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
EST: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCT AAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
genomic: CTAATGCAGGCGTTGACTATATGGTCCATAATGCAGCCTTCGAACGTCCTgtaaatatca ... caaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
atcatattctgaatcagatgatccctaaatgcatcaatttttaatcaaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
ttttaat putative branch site (score: 3)
atcaatttttaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatcacccttattttgagttaatgttttaactcccttacccttcaaacatcatgttgttttattgttagtagtttttgatgatagatctgctagacatcactcctttttaatcatattctgaatcagatgatccctaaatgcatcaatttttaatcaaattgcagAAACGGAGGGCTCTAGAAGAAAGTGAGGAAGGTCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA