1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcgttctcgctgatgcccttcccttgtctgttcccttccgttggttgtgtcgcttaccatcgctgctgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGAGCCGGCACGTGAAGATACACACGAAGCCGCTGTCGGAGCAGATCGAGA
species | Zea mays |
transcript | GRMZM2G003530_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACA AAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGEST: gi|78078101|gb|DV506516.1|DV506516
genomic: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACAgtgcgttctc ... tgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
EST: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACA AAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGEST: gi|78088532|gb|DV516925.1|DV516925
genomic: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACAgtgcgttctc ... tgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
EST: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACA AAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGEST: gi|149076004|gb|EE164574.2|EE164574
genomic: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACAgtgcgttctc ... tgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
EST: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACA AAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGEST: gi|78078358|gb|DV506773.1|DV506773
genomic: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACAgtgcgttctc ... tgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
EST: ACACCCGGCACATGAGCGTTTACTACGAGGACGTCGTCCGCAACAGAACA AAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGEST: gi|78107000|gb|DV525418.1|DV525418
genomic: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACAgtgcgttctc ... tgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
EST: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACA AAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGEST: gi|50323720|gb|CO518846.1|CO518846
genomic: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACAgtgcgttctc ... tgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
EST: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACA AAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGEST: gi|91050159|gb|EB160577.1|EB160577
genomic: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACAgtgcgttctc ... tgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
EST: ACACCCGGCACATGAGCGTTTATTACGAGGACGTCGTCCGCAACAGAACA AAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGEST: gi|78110979|gb|DV529377.1|DV529377
genomic: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACAgtgcgttctc ... tgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
EST: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACA AAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGEST: gi|71440142|gb|DR821192.1|DR821192
genomic: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACAgtgcgttctc ... tgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
EST: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACA AAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGEST: gi|78109609|gb|DV528025.1|DV528025
genomic: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACAgtgcgttctc ... tgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
EST: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACA AAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGEST: gi|33099722|gb|CF059682.1|CF059682
genomic: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACAgtgcgttctc ... tgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
EST: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACA AAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
genomic: ACACCCGGCACATGAGCGTCTACTACGAGGACGTCGTCCGCAACAGAACAgtgcgttctc ... tgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTG
ccttgtctgttcccttccgttggttgtgtcgcttaccatcgctgctgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGAGCCGGCACGTGAAGATACACACGAAGCCGCTGTCGGAGCAGATCGAGA
cgcttac putative branch site (score: 23)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgttctcgctgatgcccttcccttgtctgttcccttccgttggttgtgtcgcttaccatcgctgctgcactgcagAAGCTCTTGGATGTCCTGGATTTCCTCGGAGTGCCGAGGAGGAAGCTGGTGAGCCGGCACGTGAAGATACACACGAAGCCGCTGTCGGAGCAGATCGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT