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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtctgcacataagttcagtcttttttacgtgcttgattatgtactagtactagtaactgtgcttttgttgaaataaaaattcctgctttaatctgtagACTTATGCACTGACAACTCTGGCGGAACCGCGCGACTTTTGGACACTACGATACACTAGTGGTCTTGACGATGGCAGTCTTGTG

Basic information

species Zea mays
transcript GRMZM2G003509_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003509_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os12g41860.1 (Oryza sativa), 3'ss of exon 6
gtatgtgtctgcacataagttcagtc-ttttttacgtgcttgattatgtactagtactagtaactgtgcttttgttgaaataaaaattcctgcttt-----aatctgtagACTTATGCACTGACAACTCTGGCGGAACCGCGCGACTTTTGGACACTACGATACACTAGTGGTCTTGACGATGGCAGTCTTGTG
          | | |||    || || |   | | ||| |  ||| |   | || |  | || ||   ||||  ||    ||| ||    |||  |     | ||  ||||| ||||||| ||||||| |||||| ||| |||||||||||||| || || ||||| ||||| ||||| ||||| |||||||||
----------gtaaatatacccaatcgtgactcatgtgttgcatttttctcaagcatcactagctactctttgtttttggtaataaccattgcccttttcaattccttagACATATGCACCGACAACTTTGGCGGCACCACGCGACTTTTGGACTCTCCGCTACACAAGTGGACTTGAAGATGGGAGTCTTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78082046|gb|DV510458.1|DV510458
EST:     ATGTTATCCCTACGGGTAACGGTGGAACGATTGAGCTGATCTATATGCAG                         ACTTATGCACTGACAACTCTGGCGGAACCGCGCGACTTTTGGACACTACGA
genomic: ATGTTATCCCTACGGGTAACGGTGGAACGATTGAGCTGATCTATATGCAGgtatgtgtct ... taatctgtagACTTATGCACTGACAACTCTGGCGGAACCGCGCGACTTTTGGACACTACGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagtactagtaactgtgcttttgttgaaataaaaattcctgctttaatctgtagACTTATGCACTGACAACTCTGGCGGAACCGCGCGACTTTTGGACACTACGATACACTAGTGGTCTTGACGATGGCAGTCTTGTG
                                    ttcctgcttt  CT-rich tract
                   ttttgttgaaataaaa  TA-rich tract