1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcttgagtctgatctcggagtaaaaactggataataatcacactgggtttgtagtgtattcatttttatttgatactgacattctggtttctggactcagTTGACATCAATGTATTTCAGATAATTCTATGGTTGGTTTTATGGTGGAAACCAGTTCGAGTTATGGTCATTTTGCCAAAGATGTTCTTTGCAG
species | Zea mays |
transcript | GRMZM2G003076_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCTTAGACCAACTTTCTATTGGATCAACGGTGTGGTCTATGCAATTCAG TTGACATCAATGTATTTCAGATAATTCTATGGTTGGTTTTATGGTGGAAACEST: gi|71429006|gb|DR810056.1|DR810056
genomic: GGCTTAGACCAACTTTCTATTGGATCAACGGTGTGGTCTATGCAATTCAGgtgataaatg ... ctggactcagTTGACATCAATGTATTTCAGATAATTCTATGGTTGGTTTTATGGTGGAAAC
EST: GGCTTAGACCAACTTTCTATTGGATCAACGGTGTGGTCTATGCAATTCAG TTGACATCAATGTATTTCAGATAATTCTATGGTTGGTTTTATGGTGGAAACEST: gi|71429005|gb|DR810055.1|DR810055
genomic: GGCTTAGACCAACTTTCTATTGGATCAACGGTGTGGTCTATGCAATTCAGgtgataaatg ... ctggactcagTTGACATCAATGTATTTCAGATAATTCTATGGTTGGTTTTATGGTGGAAAC
EST: ACGGTGGGGTCTATGCAATTCAG TTGACATCAATGTTTTTCAGATAATTTTATGGTTGGTTTTATGGTGGAAAC
genomic: ACGGTGTGGTCTATGCAATTCAGgtgataaatg ... ctggactcagTTGACATCAATGTATTTCAGATAATTCTATGGTTGGTTTTATGGTGGAAAC
ggtttgtagtgtattcatttttatttgatactgacattctggtttctggactcagTTGACATCAATGTATTTCAGATAATTCTATGGTTGGTTTTATGGTGGAAACCAGTTCGAGTTATGGTCATTTTGCCAAAGATGTTCTTTGCAG
tactgac putative branch site (score: 6)
tttct putative PPT
tgtattcatttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgagtctgatctcggagtaaaaactggataataatcacactgggtttgtagtgtattcatttttatttgatactgacattctggtttctggactcagTTGACATCAATGTATTTCAGATAATTCTATGGTTGGTTTTATGGTGGAAACCAGTTCGAGTTATGGTCATTTTGCCAAAGATGTTCTTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - -gtaaaaac
- - - - - - - - - - - - - - - - - -aatcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctg