1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctttttagttctataacttgaagccacttaggcatactatatagttctttttttttgttcctgtgatgaactgagagagttggtttttgagttctgcagGCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAATAGTGATATGGTTTCAAGGCTAGAAGCAGCTGAGTCAAAGCTGCAAGAGT
species | Zea mays |
transcript | GRMZM2G002859_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCGAAGCGCCNAATGAAACTAEST: gi|50324117|gb|CO519243.1|CO519243
genomic: GCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcac ... agttctgcagGCTATTGAAGTTTCGAAGCGCCAAATGAAACTA
EST: GCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAATEST: gi|71307048|gb|DR789679.1|DR789679
genomic: GCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcac ... agttctgcagGCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAAT
EST: GCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAATEST: gi|148959420|gb|EC905446.2|EC905446
genomic: GCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcac ... agttctgcagGCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAAT
EST: GCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAATEST: gi|148986437|gb|EE030179.2|EE030179
genomic: GCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcac ... agttctgcagGCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAAT
EST: GCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAATEST: gi|21987351|gb|BQ778879.1|BQ778879
genomic: GCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcac ... agttctgcagGCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAAT
EST: GCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAG GCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAAT
genomic: GCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcac ... agttctgcagGCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAAT
ttctttttttttgttcctgtgatgaactgagagagttggtttttgagttctgcagGCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAATAGTGATATGGTTTCAAGGCTAGAAGCAGCTGAGTCAAAGCTGCAAGAGT
tttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttttagttctataacttgaagccacttaggcatactatatagttctttttttttgttcctgtgatgaactgagagagttggtttttgagttctgcagGCTATTGAAGTTTCGAAGCGCCAAATGAAACTAAGAGAGGCGTCTGGAAATAGTGATATGGTTTCAAGGCTAGAAGCAGCTGAGTCAAAGCTGCAAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA