1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cgcaagacgggcgacggccttcctctgcctgcttttctttctcgttcgttcagttggggcgagctgacggcctcccgctttcctttctttctccgtgcagCTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAG
species | Zea mays |
transcript | GRMZM2G002627_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTGTTTGAAACGATCAAGTACATCAAGTTCCTGCATGAACAAGTACAG CTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAGEST: gi|74240292|gb|DT648206.1|DT648206
genomic: TGCTGTTTGAAACGATCAAGTACATCAAGTTCCTGCATGAACAAGTACAGgtaaataatc ... ctccgtgcagCTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAG
EST: TGCTGTTTGAAACGATCAAGTACATCAAGTTCCTGCATGAACAAGTACAG CTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAGEST: gi|60394705|gb|DN227575.1|DN227575
genomic: TGCTGTTTGAAACGATCAAGTACATCAAGTTCCTGCATGAACAAGTACAGgtaaataatc ... ctccgtgcagCTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAG
EST: TGCTGTTTGAAACGATCAAGTACATCAAGTTCCTGCATGAACAAGTACAG CTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAG
genomic: TGCTGTTTGAAACGATCAAGTACATCAAGTTCCTGCATGAACAAGTACAGgtaaataatc ... ctccgtgcagCTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAG
tcgttcagttggggcgagctgacggcctcccgctttcctttctttctccgtgcagCTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAG
agctgac putative branch site (score: 11)
cctcccgctttccttt putative PPT
tttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcaagacgggcgacggccttcctctgcctgcttttctttctcgttcgttcagttggggcgagctgacggcctcccgctttcctttctttctccgtgcagCTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - -tgcctgc