Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatcactgaaatcttatatataattatgacttgtgagctccataactatgctgtactataaatgattttgttttaccttcgactgttcctccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGCAGGCCTCTGGTGCTTCTGGTGCAGAGGCTGGTGCCAGCGCTGGGGCTGT

Basic information

species Zea mays
transcript GRMZM2G001887_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G001887_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g34180.1 (Oryza sativa), 3'ss of exon 5
gaatcactgaaatcttatatataatta-tgacttgtgagct-ccataactatgctgtactataaatgattttgttttaccttcgactgttcctccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGCAGGCCTCTGGTGCTTCTGGTGCAGAGGCTGGTGCCAGCGCTGGGGCTGT
 | | |||||||| ||  |   | ||| ||     | |  | || | |   |      || |  | | ||     ||||||| |  | |||||||  |||||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||  ||||||||||||||| ||||||||||||||| ||||| |||| 
aatttactgaaatgttgaagcaacttactgggccataacttaccctcatctttgaaagctgttgaagcttcg--cttacctttgtttattcctcctattcagGTCCTGACAACTTGGATAATCTGCGGAGGCTTGCAGAGCAATTCCAAAAGCAGGCTCCTGGTGCTTCTGGTGAAGAGGCTGGTGCCAGTGCTGGAGCTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14364863|gb|BG946674.1|BG946674
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|18385240|gb|BM418439.1|BM418439
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|18172412|gb|BM347800.1|BM347800
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCATGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|60394804|gb|DN227674.1|DN227674
EST:     AGCTGCAAGATCTGCTTCGGTCGATTATCAACCAGGTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|60339434|gb|DN206407.1|DN206407
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|22819814|gb|BU499904.1|BU499904
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|32807656|gb|CD959890.1|CD959890
EST:     GATCTACTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: GATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|78087437|gb|DV515830.1|DV515830
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|32931902|gb|CF036714.1|CF036714
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|60346649|gb|DN213622.1|DN213622
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|211138546|gb|FL389992.1|FL389992
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|60340677|gb|DN207650.1|DN207650
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|16925652|gb|BM078720.1|BM078720
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|27522108|gb|CA989214.1|CA989214
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|32806383|gb|CD958617.1|CD958617
EST:     GATCTACTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: GATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|21760021|gb|BQ635562.1|BQ635562
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|71427873|gb|DR808923.1|DR808923
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|38687563|gb|CK144594.1|CK144594
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|211207058|gb|FL397903.1|FL397903
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCA
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCA
EST: gi|60401056|gb|DN233863.1|DN233863
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|18177681|gb|BM378891.1|BM378891
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|18165115|gb|BM334954.1|BM334954
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|32823073|gb|CD962795.1|CD962795
EST:     GATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: GATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|32808895|gb|CD961129.1|CD961129
EST:     GATCTACTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: GATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|211381842|gb|FL377370.1|FL377370
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAGTCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|18649472|gb|BM498291.1|BM498291
EST:     TCAACCAGC-TG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: TCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|60342382|gb|DN209355.1|DN209355
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|18450388|gb|BM428666.1|BM428666
EST:     TGCTTCCGTCGATTATCAACCAGC-TG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: TGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|6918526|gb|AW400056.1|AW400056
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|47962818|gb|CN845527.1|CN845527
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|211296941|gb|FL404454.1|FL404454
EST:     CAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: CAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|29130307|gb|CB381011.1|CB381011
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|7031231|gb|AW461119.1|AW461119
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|45567234|gb|CK985471.1|CK985471
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|60400933|gb|DN233740.1|DN233740
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|32806756|gb|CD958990.1|CD958990
EST:     GATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: GATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|149014130|gb|EE043671.2|EE043671
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|14243944|gb|BG841641.2|BG841641
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|78119546|gb|DV537930.1|DV537930
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|211443775|gb|FL403728.1|FL403728
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|9794276|gb|BE552584.1|BE552584
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|32807332|gb|CD959566.1|CD959566
EST:     GATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: GATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|211269426|gb|FK963247.1|FK963247
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGA--AATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|9794715|gb|BE553023.1|BE553023
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|32807982|gb|CD960216.1|CD960216
EST:     GATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: GATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|78107786|gb|DV526204.1|DV526204
EST:     TGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: TGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|21843331|gb|BQ703912.1|BQ703912
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|149017495|gb|EE045693.2|EE045693
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|32809284|gb|CD961518.1|CD961518
EST:     GATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: GATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|74235700|gb|DT643614.1|DT643614
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|83278322|gb|DV942330.1|DV942330
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|32792880|gb|CD945116.1|CD945116
EST:     GATCTGCTTCCGTCGATTATCAACCAGCTTA                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: GATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|78084435|gb|DV512828.1|DV512828
EST:     AGATGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|148956153|gb|EC901928.2|EC901928
EST:     AGCTGCAAGATTTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATTTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
EST: gi|16925877|gb|BM078945.1|BM078945
EST:     AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTG                         GTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC
genomic: AGCTGCAAGATCTGCTTCCGTCGATTATCAACCAGCTTGgtatgtttct ... tccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatgctgtactataaatgattttgttttaccttcgactgttcctccggttcagGTCCTGACAACCTGGACAATCTGCGGAGGCTCGCAGAGCAATTCCAGAAGCAGGCCTCTGGTGCTTCTGGTGCAGAGGCTGGTGCCAGCGCTGGGGCTGT
 ccataac  putative branch site (score: 3)
                                      ctgttcctcc  putative PPT
         tactataaatgatttt  TA-rich tract