1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gcaagcatctagcattatgttgttaagcatttttttaatgtagaagatgatactaattggtaaccttgatatacagGCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG
species | Zea mays |
transcript | GRMZM2G001265_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAGEST: gi|4321058|gb|AI467721.1|AI467721
genomic: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagcatct ... tgatatacagGCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAG
EST: CTAAT-CAACAACAATT-AG GCATAT-AAAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAGEST: gi|67022715|gb|CO451464.1|CO451464
genomic: CTAATACAACAACAATTGAGgcaagcatct ... tgatatacagGCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAG
EST: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAGEST: gi|60340511|gb|DN207484.1|DN207484
genomic: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagcatct ... tgatatacagGCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAG
EST: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAGEST: gi|67012486|gb|CO441235.1|CO441235
genomic: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagcatct ... tgatatacagGCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAG
EST: TTATGATTATGCATATCTCACTTGGTTCTGCTAATACAACACCAATNGAG GCATATGAGAAGAAAGACAACTCC-CATTGGATATATGATCTTGGCCGNAAEST: gi|60338053|gb|DN205026.1|DN205026
genomic: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagcatct ... tgatatacagGCATATGAGAAGAA-GACAACTCCACATTGGATATATGATCTTGGCCGGAA
EST: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAGEST: gi|4314907|gb|AI444707.2|AI444707
genomic: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagcatct ... tgatatacagGCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAG
EST: TTATGATTATGCATATTTCAC-TGTTTCTGCT-AT-CCACAACAATTAAG GCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAGEST: gi|71298289|gb|DR785121.1|DR785121
genomic: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagcatct ... tgatatacagGCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAG
EST: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAGAAGAAGACAAEST: gi|211352873|gb|FL030247.1|FL030247
genomic: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagcatct ... tgatatacagGCATATGAGAAGAAGACAA
EST: ATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAGEST: gi|76919122|gb|DV167600.1|DV167600
genomic: ATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagcatct ... tgatatacagGCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAG
EST: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAG
genomic: TTATGATTATGCATATTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagcatct ... tgatatacagGCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAG
gttaagcatttttttaatgtagaagatgatactaattggtaaccttgatatacagGCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG
atttttttaatgtaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagcatctagcattatgttgttaagcatttttttaatgtagaagatgatactaattggtaaccttgatatacagGCATATGAGAAGAAGACAACTCCACATTGGATATATGATCTTGGCCGGAAGAGGAATTTTGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA