1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtggtcatcagtagcttttaatatttctaataaaatcctattggaacatcatacttataggatttaactttctcatcaatgtacctggatggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAACTGATCAAGCTATTGAGCGCTCAAAAATG
species | Zea mays |
transcript | GRMZM2G000718_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|28361821|gb|CB240177.1|CB240177
genomic: AACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|6022470|gb|AW067503.1|AW067503
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCGCCGGAAGAAAACAAATGGATCAAAEST: gi|149002889|gb|EE038886.2|EE038886
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|148941490|gb|EC886419.2|EC886419
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|21843414|gb|BQ703995.1|BQ703995
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCGCCGGAAGAAAACAAATGGATCAAAEST: gi|37420501|gb|CF647941.1|CF647941
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|211541608|gb|FL367257.1|FL367257
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGGAGGAAACAAATGGACCAAAEST: gi|60398834|gb|DN231650.1|DN231650
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|33466594|gb|CF243643.1|CF243643
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|71327359|gb|DR800293.1|DR800293
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|60349330|gb|DN216303.1|DN216303
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|148993116|gb|EE033716.2|EE033716
genomic: TAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|50333643|gb|CO528769.1|CO528769
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|149112851|gb|EE295664.2|EE295664
genomic: TTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|60352046|gb|DN219019.1|DN219019
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|149009782|gb|EE041679.2|EE041679
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|78117925|gb|DV536312.1|DV536312
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|149089650|gb|EE178904.2|EE178904
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|78083753|gb|DV512146.1|DV512146
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|211285641|gb|FL366666.1|FL366666
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAAATCA-GAACTCATTAGCACEST: gi|91869534|gb|EB400432.1|EB400432
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAA-TCAAGAACTCATTAGCAC
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|71327358|gb|DR800292.1|DR800292
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|30088413|gb|CB886618.1|CB886618
genomic: TCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|28361634|gb|CB239990.1|CB239990
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAEST: gi|211411458|gb|FL312810.1|FL312810
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAA-GAACTCATTAGCACCGGAAGGAAACAAATGGACCAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|149074291|gb|EE162669.2|EE162669
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|50333644|gb|CO528770.1|CO528770
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|60343169|gb|DN210142.1|DN210142
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: AATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAAEST: gi|26456321|gb|CA827904.1|CA827904
genomic: AATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCGCCGGAAGAAAACAAATGGATCAAAEST: gi|20301313|gb|BQ164256.1|BQ164256
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
EST: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAG AAATGTCAAATCAAGAACTCATTAGCGCCGGAAGAAAACAAATGGATCAAA
genomic: TACGGGTAATGACCAGGTGGCTGAGGGAACTCCAGTTCAAATGGCATCAGgtggtcatca ... ggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAA
acatcatacttataggatttaactttctcatcaatgtacctggatggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAACTGATCAAGCTATTGAGCGCTCAAAAATG
atttaac putative branch site (score: 236)
atttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtcatcagtagcttttaatatttctaataaaatcctattggaacatcatacttataggatttaactttctcatcaatgtacctggatggttttacagAAATGTCAAATCAAGAACTCATTAGCACCGGAAGGAAACAAATGGACCAAACTGATCAAGCTATTGAGCGCTCAAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT