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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgttctggatctatacctttgagttactgcatcattcttagttcagaatttaacaatatcattgtcattcccgttttctattatattagaaaaatataatccattttccatctctcgttttattgattatgtatacctttttggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT

Basic information

species Zea mays
transcript GRMZM2G000393_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000393_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g07905.2 (Oryza sativa), 3'ss of exon 5
gttttgttctggatctatacctttgagttactgcatcattcttagttcagaatttaacaatatcattgtcattcccgttttctattatattagaaaaatataatccattttccatctctcgttttattgattatgtatacctttttggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT
||||| ||||||||| ||| || | |  |   |||||        |  || |  | | |  ||||||        ||     ||| ||  |          |  |  || | ||| | | |||||  |  | |  |    || ||||| ||| |||||||||||||||||||||||||||||| || || |||||||||||||| | ||| || || ||||||||||||
gttttattctggatccatatctcttatatgtagcatc--------tctagcaccttagacaatcatt--------cgccccatatcattct---------caggcttttcttcatgtttagttttcctactgaaattgttctgtttggtccttcagTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTT

upper sequence: GRMZM2G000393_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA14G14000.2 (Glycine max), 3'ss of exon 5
gttttgttctggatctatacctttgagttactgcatcattcttagttcagaatttaacaatatcattgtcattcccgttttctattatattagaaa--aatataatccatttt-------ccatctctcgtttta--ttgattatg--tatacctttttggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT
||||        |  ||| | | | || || |  |  | ||  |         || |   |||  | || |||    || | ||||    | |     ||| ||||   || |       | |||    |||  |  ||  |||||   | |   |||   |    |||||| ||||||||||||||||| || || |||||||| || ||||||||    |||||||| ||| ||||||||
gtttctccactcacttatccttattagctattttagtactcgcatgatttctctttaagctatagtggttatttatcttctttatttcccttggtgctaatctaatagtttgtgagataacaatcatgggttcaaacttatttatggccaaataatttctaattgacagTGCTAATCGAGGTGATAGCTTAGATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTT

upper sequence: GRMZM2G000393_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv04s0008g06480.t01 (Vitis vinifera), 3'ss of exon 5
gttttgttctggatctatacctttgagttac---tgcatcattcttagttcagaatttaacaatatcattgtcattcccgttttctattatattagaaaaatataatccattttccatctctcgttttattgattatgtatacctttttggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT
||| |       |  || | |||    ||     || ||    |||  ||     |||     |   |     |     ||||    ||  |||| ||  ||       ||  |  || |         ||  |||| |  || |  ||      ||||||| ||||||||||||||||| || || ||||||||||  ||||||||   ||||||||| ||||||||||||
gttgtcccacacacttaaatcttcattttgtatttgtatggcacttcctttcttttttcctccttataaaactagcttagtttatctttgcattacaagcattatgattatggtggattttatagaaagtt--ttatcttaacttaattatg---gcagTGCTAATCGAGGTGATAGCTTAGATCGCAATATTGATGTGGAAAATCGCTTGACAAAGGATTTCTTGATTCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148982630|gb|EE028428.2|EE028428
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|78093005|gb|DV521379.1|DV521379
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|71435122|gb|DR816172.1|DR816172
EST:     GAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCAGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: GAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|32834517|gb|CD974195.1|CD974195
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|149106895|gb|EE188795.2|EE188795
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|76920610|gb|DV168260.1|DV168260
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|31359008|gb|CD443365.1|CD443365
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|78022345|gb|DV490732.1|DV490732
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|31357853|gb|CD442210.1|CD442210
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|149096405|gb|EE182139.2|EE182139
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|22819731|gb|BU499821.1|BU499821
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCG
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCG
EST: gi|4621544|gb|AI612377.1|AI612377
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCT
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCT
EST: gi|71426993|gb|DR808043.1|DR808043
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGTTATTCG-TTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|21843330|gb|BQ703911.1|BQ703911
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCG
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCG
EST: gi|149005474|gb|EE040029.2|EE040029
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|61119808|gb|DN560769.1|DN560769
EST:     GAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: GAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|50323553|gb|CO518679.1|CO518679
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|89250822|gb|DY622608.1|DY622608
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCCAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|94479524|gb|EB708482.1|EB708482
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|149064607|gb|EE286478.2|EE286478
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|60344825|gb|DN211798.1|DN211798
EST:     TGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: TGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|71311661|gb|DR792235.1|DR792235
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|32839844|gb|CD979525.1|CD979525
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|148994442|gb|EE034088.2|EE034088
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|71435123|gb|DR816173.1|DR816173
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|71448461|gb|DR829511.1|DR829511
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCCTTTTGTTATTGGTCGGAG                         TGCCAATCGAGGTGATAGCTTGGA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGA
EST: gi|71772159|gb|DR970096.1|DR970096
EST:     TTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: TTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|22521196|gb|BU080007.1|BU080007
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGCTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|149096404|gb|EE182138.2|EE182138
EST:     AGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|5525207|gb|AI861205.1|AI861205
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGT-ATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|211281812|gb|FL349985.1|FL349985
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAANNATCG-C
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAA-ATCGGC
EST: gi|67038278|gb|CO464608.1|CO464608
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|78093004|gb|DV521378.1|DV521378
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|60346466|gb|DN213439.1|DN213439
EST:     GGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: GGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|32928809|gb|CF033621.1|CF033621
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|71436237|gb|DR817287.1|DR817287
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|71772160|gb|DR970097.1|DR970097
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|32839845|gb|CD979526.1|CD979526
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|148938471|gb|EC882790.2|EC882790
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
EST: gi|31350524|gb|CD434881.1|CD434881
EST:     GCTATTCGTTTTGTTATTGGTCGGAG                         -GCCAAATCGAGGGGATAGCTTGGACCGTAATATTGATGATGAAAATCGGC
genomic: GCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTG-CAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGC
EST: gi|71426994|gb|DR808044.1|DR808044
EST:     AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAG                         TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA
genomic: AAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGgttttgttct ... ggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatccattttccatctctcgttttattgattatgtatacctttttggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT
                       tattgat  putative branch site (score: 3)
                                      cctttttg  putative PPT
                    ttttattgattatgta  TA-rich tract