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gtgaagataccagtgtaatggaaaatatttatgactgttttgtattgtagagattatgttatgtatgtaactatgtatccaatattcacccccaaatgctcttgtttcacccccaaattgctctacctatccatcttgggcagaactttatctaacagtcaattcattttctactacagTTACCTGAGTGCCTCCGTATTGTAGCACATCTGCGTCGAATTGGAGTTTTCAGTGAGTCAGAATTGCGCTTACAG
species | Zea mays |
transcript | AC235544.1_FGT004 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACAATCATTAATTTCCCAGCTTCTCCAGAAACTCCGATCAAATATTCAG TTACCTGAGTGCCTCCGTATTGTAGCACATCTGCGTCGAATTGGAGTTTTCEST: gi|71770990|gb|DR968927.1|DR968927
genomic: TACAATCATTAATTTCCCAGCTTCTCCAGAAACTCCGATCAAATATTCAGgtgaagatac ... tctactacagTTACCTGAGTGCCTCCGTATTGTAGCACATCTGCGTCGAATTGGAGTTTTC
EST: TACAATCATTAATTTCCCAGCTTCTCCAGAAACTCCGATCAAATATTCAG TTACCTGAGTGCCTCCGTATTGTAGCACATCTGCGTCGAATTGGAGTTTTCEST: gi|149040625|gb|EE046866.2|EE046866
genomic: TACAATCATTAATTTCCCAGCTTCTCCAGAAACTCCGATCAAATATTCAGgtgaagatac ... tctactacagTTACCTGAGTGCCTCCGTATTGTAGCACATCTGCGTCGAATTGGAGTTTTC
EST: TACAATCATTAATTTCCCAGCTTCTCCAGAAACTCCGATCAAATATTCAG TTACCTGAGTGCCTCCGTATTGTAGCACATCTGCGTCGAATTGGAGTTTTCEST: gi|71312838|gb|DR792945.1|DR792945
genomic: TACAATCATTAATTTCCCAGCTTCTCCAGAAACTCCGATCAAATATTCAGgtgaagatac ... tctactacagTTACCTGAGTGCCTCCGTATTGTAGCACATCTGCGTCGAATTGGAGTTTTC
EST: TACAATCATTAATTTCCCAGCTTCTCCAGAAACTCCGATCAAATATTCAG TTACCTGAGTGCCTCCGTATTGTAGCACATCTGCGTCGAATTGGAGTTTTC
genomic: TACAATCATTAATTTCCCAGCTTCTCCAGAAACTCCGATCAAATATTCAGgtgaagatac ... tctactacagTTACCTGAGTGCCTCCGTATTGTAGCACATCTGCGTCGAATTGGAGTTTTC
acctatccatcttgggcagaactttatctaacagtcaattcattttctactacagTTACCTGAGTGCCTCCGTATTGTAGCACATCTGCGTCGAATTGGAGTTTTCAGTGAGTCAGAATTGCGCTTACAG
atctaac putative branch site (score: 80)
ttcattttct putative PPT
aattcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagataccagtgtaatggaaaatatttatgactgttttgtattgtagagattatgttatgtatgtaactatgtatccaatattcacccccaaatgctcttgtttcacccccaaattgctctacctatccatcttgggcagaactttatctaacagtcaattcattttctactacagTTACCTGAGTGCCTCCGTATTGTAGCACATCTGCGTCGAATTGGAGTTTTCAGTGAGTCAGAATTGCGCTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG