1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttagactaattctgctacttacaactactgcagtcacgaagacaaaatactgacctcttcgttttccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAGACGATACTCGAGAAGGCCCAGAGCAACCTCTCGTACCACGCGACTGGAG
species | Zea mays |
transcript | AC233960.1_FGT003 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAG GTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAGEST: gi|211234353|gb|FK958981.1|FK958981
genomic: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAGgttagactaa ... ccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAG
EST: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAG GTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGEST: gi|211339302|gb|FK958992.1|FK958992
genomic: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAGgttagactaa ... ccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTG
EST: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAG GTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAGEST: gi|211234359|gb|FK958987.1|FK958987
genomic: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAGgttagactaa ... ccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAG
EST: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAG GTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAGEST: gi|211234358|gb|FK958986.1|FK958986
genomic: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAGgttagactaa ... ccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAG
EST: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAG GTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAGEST: gi|211234356|gb|FK958984.1|FK958984
genomic: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAGgttagactaa ... ccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAG
EST: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAG GTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAGEST: gi|211234362|gb|FK958990.1|FK958990
genomic: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAGgttagactaa ... ccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAG
EST: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAG GTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAGEST: gi|211234357|gb|FK958985.1|FK958985
genomic: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAGgttagactaa ... ccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAG
EST: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAG GTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAGEST: gi|211234355|gb|FK958983.1|FK958983
genomic: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAGgttagactaa ... ccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAG
EST: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATT-CACGAGCAGCTCGAG GTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAGEST: gi|211234361|gb|FK958989.1|FK958989
genomic: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAGgttagactaa ... ccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAG
EST: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAG GTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAGEST: gi|211234354|gb|FK958982.1|FK958982
genomic: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAGgttagactaa ... ccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAG
EST: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAG GTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAG
genomic: CGCTGAAGTACCAGATTGAAGTCCAAAGGAAATTGCACGAGCAGCTCGAGgttagactaa ... ccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAG
acaactactgcagtcacgaagacaaaatactgacctcttcgttttccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAGACGATACTCGAGAAGGCCCAGAGCAACCTCTCGTACCACGCGACTGGAG
tactgac putative branch site (score: 7)
cctcttcgttttcc CT-rich tract
acaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagactaattctgctacttacaactactgcagtcacgaagacaaaatactgacctcttcgttttccaagtgcagGTTCAGAAGAAGCTGCAGATGCGGATCGAGGCGCAAGGCAAATACTTGCAGACGATACTCGAGAAGGCCCAGAGCAACCTCTCGTACCACGCGACTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA