1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcgattctgttatttgcatatgctgctcctttttttccctgtttgatcacgtctttgttgaatattcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACAAGAATTATCACTTGAAGATGAAAGCGTCAAGGTTTATTTTCAGTGAGA
species | Zea mays |
transcript | AC233895.1_FGT001 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|31351014|gb|CD435371.1|CD435371
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|22549146|gb|BU101347.1|BU101347
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGCTATTGGATGAGAAACAGACCACCATCTAEST: gi|14569289|gb|BI097612.1|BI097612
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTA
EST: CACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|32850813|gb|CD990494.1|CD990494
genomic: CACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|84980121|gb|DW530470.1|DW530470
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|8665685|gb|BE186501.1|BE186501
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: ATATTGTCACCAGCACTGGGGAGGGAAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|32931969|gb|CF036781.1|CF036781
genomic: ATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|87155627|gb|DY400416.1|DY400416
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|22819488|gb|BU499578.1|BU499578
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAEST: gi|33097827|gb|CF057787.1|CF057787
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAA
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|32838111|gb|CD977789.1|CD977789
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|32838243|gb|CD977921.1|CD977921
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|32850802|gb|CD990483.1|CD990483
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|22473335|gb|BU037815.1|BU037815
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAEST: gi|111990961|gb|EE332393.1|EE332393
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACA
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|26559180|gb|CA831415.1|CA831415
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAEST: gi|33092800|gb|CF052794.1|CF052794
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTT-ATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGA
EST: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACEST: gi|166481550|gb|EG105102.1|EG105102
genomic: AAAATGAAGTATATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGAC
EST: ATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAG CCCAAGTTATTGGATGAGAAACAGAACCACCATCTACAAAAGGGCCGTAGA
genomic: ATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagcgatt ... ttcatggcagCCCAAGTTATTGGATGAGAAACAGA-CCACCATCTACAAAAGGGCCGTAGA
atgctgctcctttttttccctgtttgatcacgtctttgttgaatattcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACAAGAATTATCACTTGAAGATGAAAGCGTCAAGGTTTATTTTCAGTGAGA
gtttgat putative branch site (score: 656)
ttgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgattctgttatttgcatatgctgctcctttttttccctgtttgatcacgtctttgttgaatattcatggcagCCCAAGTTATTGGATGAGAAACAGACCACCATCTACAAAAGGGCCGTAGACAAGAATTATCACTTGAAGATGAAAGCGTCAAGGTTTATTTTCAGTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG