1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aactgtgaagtgatattgttctttttagataatacatttcatttgttcttatcataatctgtactgaggataggccttttctggatattatgttctgcagGGACATATTTGCTGACTATGCTGATTTTTGTTTCAAGACTTTTGGCAATCGAGTCAAGAACTGGTTCACATTAAATGAGCCAAGGATAGTAGCATTCCTT
species | Zea mays |
transcript | AC217401.3_FGT002 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCGCTTGCGCTTCAGAAGAAGTACCAAGGCTGGTTAGGCCCAAAAATTGT GGACATATTTGCTGACTATGCTGATTTTTGTTTCAAGACTTTTGGCAATCGEST: gi|149081712|gb|EE170865.2|EE170865
genomic: CCGCTTGCGCTTCAGAAGAAGTACCAAGGCTGGTTAGGCCCAAAAATTGTgtaagggaga ... tgttctgcagGGACATATTTGCTGACTATGCTGATTTTTGTTTCAAGACTTTTGGCAATCG
EST: CCGCTTGCGCTTCAGAAGAAGTACCAAGGCTGGTTAGGCCCAAAAATTGT GGACATATTTGCTGACTATGCTGATTTTTGTTTCAAGACTTTTGGCAATCGEST: gi|149013746|gb|EE043205.2|EE043205
genomic: CCGCTTGCGCTTCAGAAGAAGTACCAAGGCTGGTTAGGCCCAAAAATTGTgtaagggaga ... tgttctgcagGGACATATTTGCTGACTATGCTGATTTTTGTTTCAAGACTTTTGGCAATCG
EST: CAGAAGAAGTACCAAGGCTGGTTAGGCCCAAAAATTGT GGACATATTTGCTGACTATGCTGATTTTTGTTTCAAGACTTTTGGCAATCCEST: gi|149014535|gb|EE044169.2|EE044169
genomic: CAGAAGAAGTACCAAGGCTGGTTAGGCCCAAAAATTGTgtaagggaga ... tgttctgcagGGACATATTTGCTGACTATGCTGATTTTTGTTTCAAGACTTTTGGCAATCG
EST: CCGCTTGCGCTTCAGAAGAAGTACCAAGGCTGGTTAGGCCCAAAAATTGT GGACATATTTGCTGACTATGCTGATTTTTGTTTCAAGACTTTTGGCAATCG
genomic: CCGCTTGCGCTTCAGAAGAAGTACCAAGGCTGGTTAGGCCCAAAAATTGTgtaagggaga ... tgttctgcagGGACATATTTGCTGACTATGCTGATTTTTGTTTCAAGACTTTTGGCAATCG
ttcttatcataatctgtactgaggataggccttttctggatattatgttctgcagGGACATATTTGCTGACTATGCTGATTTTTGTTTCAAGACTTTTGGCAATCGAGTCAAGAACTGGTTCACATTAAATGAGCCAAGGATAGTAGCATTCCTT
atattatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgtgaagtgatattgttctttttagataatacatttcatttgttcttatcataatctgtactgaggataggccttttctggatattatgttctgcagGGACATATTTGCTGACTATGCTGATTTTTGTTTCAAGACTTTTGGCAATCGAGTCAAGAACTGGTTCACATTAAATGAGCCAAGGATAGTAGCATTCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtactg