1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaattctaaataagtcgaaatctttcataatttttttcaatctcattcaatccacatgggataagaataaccgaacatggccttactgttgctttttcagGAATTCAATAAACATGACAAGGAGCCATCAAAGTACATTAAACACTGGACGGGCACCAAACCGAAGACTGGTGCAAAATACACATGTGACATTGGATATG
species | Zea mays |
transcript | AC205703.4_FGT002 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGAAGGATTAAAGAAATGTACTGCTATACTTCTTCGGACATTGTGAAG GAATTCAATAAACATGACAAGGAGCCATCAAAGTACATTAAACACTGGACGEST: gi|67032896|gb|CO461645.1|CO461645
genomic: CAAGAAGGATTAAAGAAATGTACTGCTATACTTCTTCGGACATTGTGAAGgtatttaaat ... gctttttcagGAATTCAATAAACATGACAAGGAGCCATCAAAGTACATTAAACACTGGACG
EST: CAAGAAGGATTAAAGAAATGTACTGCTATACTTCTTCGGACATTGTGAAG GAATTCAATAAACATGACAAGGAGCCATCAAAGTACATTAAACACTGGACGEST: gi|211162839|gb|FL160696.1|FL160696
genomic: CAAGAAGGATTAAAGAAATGTACTGCTATACTTCTTCGGACATTGTGAAGgtatttaaat ... gctttttcagGAATTCAATAAACATGACAAGGAGCCATCAAAGTACATTAAACACTGGACG
EST: CAAGAAGGATTAAAGAAATGTACTGCTATACTTCTTCGGACATTGTGAAG GAATTCAATAAACATGACAAGGAGCCATCAAAGTACATTAAACACTGGACGEST: gi|28931239|gb|CB334600.1|CB334600
genomic: CAAGAAGGATTAAAGAAATGTACTGCTATACTTCTTCGGACATTGTGAAGgtatttaaat ... gctttttcagGAATTCAATAAACATGACAAGGAGCCATCAAAGTACATTAAACACTGGACG
EST: CAAGAAGGATTAAAGAAATGTACTGCTATACTTCTTCGGACATTGTGAAG GAATTCAATAAACATGACAAGGAGCCATCAAAGTACATTAAACACTGGACG
genomic: CAAGAAGGATTAAAGAAATGTACTGCTATACTTCTTCGGACATTGTGAAGgtatttaaat ... gctttttcagGAATTCAATAAACATGACAAGGAGCCATCAAAGTACATTAAACACTGGACG
ttcaatccacatgggataagaataaccgaacatggccttactgttgctttttcagGAATTCAATAAACATGACAAGGAGCCATCAAAGTACATTAAACACTGGACGGGCACCAAACCGAAGACTGGTGCAAAATACACATGTGACATTGGATATG
ttgctttttc CT-rich tract
ataagaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattctaaataagtcgaaatctttcataatttttttcaatctcattcaatccacatgggataagaataaccgaacatggccttactgttgctttttcagGAATTCAATAAACATGACAAGGAGCCATCAAAGTACATTAAACACTGGACGGGCACCAAACCGAAGACTGGTGCAAAATACACATGTGACATTGGATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - -ctttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - cacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttactg