1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agctgaaccgtgctgtaatttgttgaaggcttgaaattcattcactttattttataccagattttaaaaaaactcaaactttttttttttgcatatgcagTCCGATGATCATGAAGTCATTGTGAATTTGCTGTGTTCTGAAATAGTTCCTTTGTGTCTGCGTGCTATTGAGATGGGCAGTGAACTTTCAAAAAAG
species | Zea mays |
transcript | AC191251.3_FGT005 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGAGTTCTTGAGGATTAGTAGCCTGAGCGTGATCGGTGCTCTTGTGAAG TCCGATGATCATGAAGTCATTGTGAATTTGCTGTGTTCTGAAATAGTTCCTEST: gi|148981581|gb|EE027738.2|EE027738
genomic: ATGAGTTCTTGAGGATTAGTAGCCTGAGCGTGATCGGTGCTCTTGTGAAGgtaataaatt ... gcatatgcagTCCGATGATCATGAAGTCATTGTGAATTTGCTGTGTTCTGAAATAGTTCCT
EST: ATGAGTTCTTGAGGATTAGTAGCCTGAGCGTGATCGGTGCTCTTGTGAAG TCCGATGATCATGAAGTCATTGTGAATTTGCTGTGTTCTGAAATAGTTCCTEST: gi|50336378|gb|CO531504.1|CO531504
genomic: ATGAGTTCTTGAGGATTAGTAGCCTGAGCGTGATCGGTGCTCTTGTGAAGgtaataaatt ... gcatatgcagTCCGATGATCATGAAGTCATTGTGAATTTGCTGTGTTCTGAAATAGTTCCT
EST: ATGAGTTCTTGAGGATTAGTAGCCTGAGCGTGATCGGTGCTCTTGTGAAG TCCGATGATCATGAAGTCATTGTGAATTTGCTGTGTTCTGA
genomic: ATGAGTTCTTGAGGATTAGTAGCCTGAGCGTGATCGGTGCTCTTGTGAAGgtaataaatt ... gcatatgcagTCCGATGATCATGAAGTCATTGTGAATTTGCTGTGTTCTGA
tttattttataccagattttaaaaaaactcaaactttttttttttgcatatgcagTCCGATGATCATGAAGTCATTGTGAATTTGCTGTGTTCTGAAATAGTTCCTTTGTGTCTGCGTGCTATTGAGATGGGCAGTGAACTTTCAAAAAAG
ctttttttttttgcat CT-rich tract
attttaaaaaaactca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctgaaccgtgctgtaatttgttgaaggcttgaaattcattcactttattttataccagattttaaaaaaactcaaactttttttttttgcatatgcagTCCGATGATCATGAAGTCATTGTGAATTTGCTGTGTTCTGAAATAGTTCCTTTGTGTCTGCGTGCTATTGAGATGGGCAGTGAACTTTCAAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
-gctgaac
- - - - cgtgctg
- - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa