1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctaatttttctttataaacaagttgagatgttctggatcctgaataagttttcataagagctttgtattttgatcttttctgggttttgaacttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTCACACATT
species | Zea mays |
transcript | GRMZM5G886044_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTEST: gi|76011108|gb|DT938278.1|DT938278
genomic: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTGgtaatatatc ... acttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
EST: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTEST: gi|71438985|gb|DR820035.1|DR820035
genomic: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTGgtaatatatc ... acttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
EST: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTEST: gi|71427292|gb|DR808342.1|DR808342
genomic: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTGgtaatatatc ... acttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
EST: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTEST: gi|71438108|gb|DR819158.1|DR819158
genomic: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTGgtaatatatc ... acttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
EST: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
genomic: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTGgtaatatatc ... acttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
aagttttcataagagctttgtattttgatcttttctgggttttgaacttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTCACACATT
ttttgat putative branch site (score: 4)
cttttgc putative PPT
tattttgatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaatttttctttataaacaagttgagatgttctggatcctgaataagttttcataagagctttgtattttgatcttttctgggttttgaacttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTCACACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC