1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaagtgataggatcaagcatagagatgaatagaatcgcacattgtaagcagcatgtaattgtttggtgcattaaacataattttctgaatgattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG
species | Zea mays |
transcript | GRMZM5G883149_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCAEST: gi|211335317|gb|FL100773.1|FL100773
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCAEST: gi|60344091|gb|DN211064.1|DN211064
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCAEST: gi|32937965|gb|CF042784.1|CF042784
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGTTGAAAAGGTGCCTGGTCAEST: gi|50324980|gb|CO520106.1|CO520106
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCAEST: gi|50324981|gb|CO520107.1|CO520107
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCAEST: gi|211477574|gb|FL100774.1|FL100774
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCAEST: gi|116827357|gb|EC871252.1|EC871252
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCAEST: gi|40303119|gb|CK347506.1|CK347506
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCAEST: gi|211529711|gb|FL481418.1|FL481418
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCAEST: gi|211477578|gb|FL100778.1|FL100778
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGEST: gi|5714079|gb|AI944064.1|AI944064
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGG
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCAEST: gi|113703727|gb|EE681231.1|EE681231
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
aagcagcatgtaattgtttggtgcattaaacataattttctgaatgattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG
attaaacataattttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagtgataggatcaagcatagagatgaatagaatcgcacattgtaagcagcatgtaattgtttggtgcattaaacataattttctgaatgattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG