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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctgcaggctgtatctatttcaaattttaactgaagaaactggtttcttttaacttactagctatcgttatttgcgtgcagACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTTCTCATGTGATGTTGTGCTTTATATTTTGGGGGTGACGACGGAGTATCTA

Basic information

species Zea mays
transcript GRMZM5G883149_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166429976|gb|EG169952.1|EG169952
EST:     GTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG                         ACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTT
genomic: GTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAGgtaggctgca ... ttgcgtgcagACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTT
EST: gi|78087243|gb|DV515636.1|DV515636
EST:     CTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG                         ACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTT
genomic: CTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAGgtaggctgca ... ttgcgtgcagACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTT
EST: gi|166651131|gb|EG138260.1|EG138260
EST:     GAAAAGGTGCCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG                         ACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTC
genomic: GAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAGgtaggctgca ... ttgcgtgcagACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTC
EST: gi|78087242|gb|DV515635.1|DV515635
EST:     CTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG                         ACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTT
genomic: CTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAGgtaggctgca ... ttgcgtgcagACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaactgaagaaactggtttcttttaacttactagctatcgttatttgcgtgcagACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTTCTCATGTGATGTTGTGCTTTATATTTTGGGGGTGACGACGGAGTATCTA
                         aacttac  putative branch site (score: 2)
                 tttcttttaactta  TA-rich tract