1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttggctctaattagtagatcgcaggatgatttgtttcgaatgcaggtaatagtaaatgacactttttaaattttaagctctatgttattgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTGTGTTAAAGCCCACAC
species | Zea mays |
transcript | GRMZM5G880300_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGA-ACATTCTTGGGGATCTTAAGCTCEST: gi|74236784|gb|DT644698.1|DT644698
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTC
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTEST: gi|211479938|gb|FL425914.1|FL425914
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTEST: gi|91877551|gb|EB407508.1|EB407508
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTEST: gi|93017644|gb|EB643164.1|EB643164
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTEST: gi|76281315|gb|DV020883.1|DV020883
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTEST: gi|211328326|gb|FL186217.1|FL186217
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTEST: gi|84980275|gb|DW530624.1|DW530624
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTEST: gi|211069174|gb|FL417736.1|FL417736
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTEST: gi|101389214|gb|EB816562.1|EB816562
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTEST: gi|93017643|gb|EB643163.1|EB643163
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTEST: gi|74236783|gb|DT644697.1|DT644697
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTEST: gi|84980198|gb|DW530547.1|DW530547
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
EST: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG GCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
genomic: TCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATGgtaagttggc ... ttgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGT
caggtaatagtaaatgacactttttaaattttaagctctatgttattgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTGTGTTAAAGCCCACAC
tattgat putative branch site (score: 31)
aatagtaaatgacact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttggctctaattagtagatcgcaggatgatttgtttcgaatgcaggtaatagtaaatgacactttttaaattttaagctctatgttattgatttcagGCGTCCCTGTCTGTGGTAGAGACATTCTTGGGGATCTTAAGCTCAAAGAGTGTGTTAAAGCCCACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA