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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatccagtttagtagatgaatcaccgctatgggtgtttttctattcttgaataggcatgtggttctattgatggttgtttgatgtttggtatattgtgttctgattgtagGGGGTGACAAATCCTTTTGCTATGAAGATGACCACAGGGTTCTTGTTTGCGAGTTCATCCTCTAGAATGTATTGGGTTGTCGCCACGAAAAAACACACGA

Basic information

species Zea mays
transcript GRMZM5G880265_T02
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71304110|gb|DR788176.1|DR788176
EST:     TGAGAAGCTCAAAGAAGGGGAAGACATCTACATCTATCA                         GGGGTGACAAATCCTTTTGCTATGAAGATGACCACAGGGTTCTTGTTTGCG
genomic: TGAGAAGCTCAAAGAAGGGGAAGACATCTACATCTATCAgtaagtgatc ... ctgattgtagGGGGTGACAAATCCTTTTGCTATGAAGATGACCACAGGGTTCTTGTTTGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtggttctattgatggttgtttgatgtttggtatattgtgttctgattgtagGGGGTGACAAATCCTTTTGCTATGAAGATGACCACAGGGTTCTTGTTTGCGAGTTCATCCTCTAGAATGTATTGGGTTGTCGCCACGAAAAAACACACGA
                                           ttctgat  putative branch site (score: 3)
                                  tatattgt  TA-rich tract