1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttccttcagaagctatcttacgtattttttttcaagagagaaaaaaaaagctttcttacactatggtgattgctgaccatctatctacatgatactccagGTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAGGGCATGACAAGGAACTACGTGTTCATGGCTGTCCTCAGCAGCACGGTGA
species | Zea mays |
transcript | GRMZM5G878058_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGATATTGTTCTGAATACGATAATTTTCAACTCATTCGTCTTCTGTCAG GTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAGEST: gi|149095267|gb|EE180895.2|EE180895
genomic: CTGATATTGTTCTGAATACGATAATTTTCAACTCATTCGTCTTCTGTCAGgtatgactat ... gatactccagGTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAG
EST: CTGATATTGTTCTGAATACGATAATTTTCAACTCATTCGTCTTCTGTCAG GTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAGEST: gi|211048549|gb|FL062133.1|FL062133
genomic: CTGATATTGTTCTGAATACGATAATTTTCAACTCATTCGTCTTCTGTCAGgtatgactat ... gatactccagGTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAG
EST: CTGATATTGTTCTGAATACGATAATTTTCAACTCATTCGTCTTCTGTCAG GTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAGEST: gi|211048550|gb|FL062134.1|FL062134
genomic: CTGATATTGTTCTGAATACGATAATTTTCAACTCATTCGTCTTCTGTCAGgtatgactat ... gatactccagGTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAG
EST: CTGATATTGTTCTGAATACGATAATTTTCAACTCATTCGTCTTCTGTCAK GTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAGEST: gi|211048548|gb|FL062132.1|FL062132
genomic: CTGATATTGTTCTGAATACGATAATTTTCAACTCATTCGTCTTCTGTCAGgtatgactat ... gatactccagGTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAG
EST: CTGATATTGTTCTGAATACGATAATTTTCAACTCATTCGTCTTCTGTCAG GTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAG
genomic: CTGATATTGTTCTGAATACGATAATTTTCAACTCATTCGTCTTCTGTCAGgtatgactat ... gatactccagGTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAG
aaaagctttcttacactatggtgattgctgaccatctatctacatgatactccagGTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAGGGCATGACAAGGAACTACGTGTTCATGGCTGTCCTCAGCAGCACGGTGA
tgctgac putative branch site (score: 91)
tttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccttcagaagctatcttacgtattttttttcaagagagaaaaaaaaagctttcttacactatggtgattgctgaccatctatctacatgatactccagGTGTTCAATGAAATAAGCTCTCGGGAGATGGAGAAGATCAACGTGCTCAAGGGCATGACAAGGAACTACGTGTTCATGGCTGTCCTCAGCAGCACGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - cagaagc
- - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgac