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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcataagctgtaaaccctaacataagtcctacaattatataacatgttgtacaatttgttttagttccagaagttcagaaaaaaaaattgtttgtccacagGTGCTTACCTCACAAAGGTGCCCTCTAATCCTGGAGCCGGTGACGTACTAATGACTTTCCTTGGGTCTGTGATCATATCATTTGCATTCTCGATCTTCAA

Basic information

species Zea mays
transcript GRMZM5G873519_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G873519_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g32830.1 (Oryza sativa), 3'ss of exon 2
gtgtgcataagctgtaaaccctaacataagtcctacaattatataacatgttgtacaatttgttttagttccagaagttcagaaaaaaaaattgtttgtccacagGTGCTTACCTCACAAAGGTGCCCTCTAATCCTGGAGCCGGTGACGTACTAATGACTTTCCTTGGGTCTGTGATCATATCATTTGCATTCTCGATCTTCAA
                     |||  |||  |||   || | |||      |   ||| ||||          ||| |    || ||     | ||  |   |||||| |||||||||||||| ||| |||||||||||||| |||||||| || |||   || ||||| || || |||||||| ||||||||||| || |||||
-----------------gttgtaaactaaaccctg--atca-atagtgctctaatcaagttgt----------gaattctgaaataagttggttttaattgccagGTGATTACCTCACAAAGGCGCCATCTAATCCTGGAGCTGGTGACGTCCTGATGGGATTTCTTGGTTCAGTCATCATATCGTTTGCATTCTCAATGTTCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76285584|gb|DV025152.1|DV025152
EST:     GGCGCTAGCCTATGGGTACATCTCAGGGTTTGGACTTGATGCCGTGCTAG                         GTGCTTACCTCACAAAGGTGCCCTCTAATCCTGGAGCCGGTGACGTACTAA
genomic: GGCGCTAGCCTATGGGTACATCTCAGGGTTTGGACTTGATGCCGTGCTAGgtgtgcataa ... ttgtccacagGTGCTTACCTCACAAAGGTGCCCTCTAATCCTGGAGCCGGTGACGTACTAA
EST: gi|32851469|gb|CD991150.1|CD991150
EST:     GGCGCTAGCCTATGGGTACATCTCAGGGTTTGGACTTGATGCTGTGCTAG                         GTGCTTACCTCACAAAGGTGCCCTCTAATCCTGGAGCCGGTGACGTACTAA
genomic: GGCGCTAGCCTATGGGTACATCTCAGGGTTTGGACTTGATGCCGTGCTAGgtgtgcataa ... ttgtccacagGTGCTTACCTCACAAAGGTGCCCTCTAATCCTGGAGCCGGTGACGTACTAA
EST: gi|211315102|gb|FL381332.1|FL381332
EST:     GGCGCTAGCCTATGGGTACATCTCAGGGTTGGGACTTGATGCCGTGCTAG                         GTGCTTACCTCACAAAGGTGCC
genomic: GGCGCTAGCCTATGGGTACATCTCAGGGTTTGGACTTGATGCCGTGCTAGgtgtgcataa ... ttgtccacagGTGCTTACCTCACAAAGGTGCC
EST: gi|211200162|gb|FL429646.1|FL429646
EST:     GGCGCTAGCCTATGGGTACATCTCAGGGTTTGGACTTGATGCCGTGCTAG                         GTGCTTACCTCACAAAGGTGCCCTCTAATCCTGGAGCCGGTGACGTACTAA
genomic: GGCGCTAGCCTATGGGTACATCTCAGGGTTTGGACTTGATGCCGTGCTAGgtgtgcataa ... ttgtccacagGTGCTTACCTCACAAAGGTGCCCTCTAATCCTGGAGCCGGTGACGTACTAA
EST: gi|211231751|gb|FL386173.1|FL386173
EST:     GGCGCTAGCCTATGGGTACATCTCAGGGTTTGGACTTGATGCCGTGCTAG                         GTGCTTACCTCACAAAGGGTGCCCTCTA-TCCTGGAGCCGGTGACGTACTA
genomic: GGCGCTAGCCTATGGGTACATCTCAGGGTTTGGACTTGATGCCGTGCTAGgtgtgcataa ... ttgtccacagGTGCTTACCTCACAAAGG-TGCCCTCTAATCCTGGAGCCGGTGACGTACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtacaatttgttttagttccagaagttcagaaaaaaaaattgtttgtccacagGTGCTTACCTCACAAAGGTGCCCTCTAATCCTGGAGCCGGTGACGTACTAATGACTTTCCTTGGGTCTGTGATCATATCATTTGCATTCTCGATCTTCAA
                                            tttgtcc  CT-rich tract
                              agaaaaaaaaattgtt  TA-rich tract